View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_19 (Length: 403)

Name: NF21239_low_19
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_19
NF21239_low_19
[»] chr6 (11 HSPs)
chr6 (1-403)||(2568119-2568521)
chr6 (233-356)||(2671720-2671846)
chr6 (15-120)||(2635029-2635134)
chr6 (1-120)||(2593055-2593173)
chr6 (228-361)||(2624311-2624444)
chr6 (140-211)||(2671597-2671668)
chr6 (216-358)||(2592796-2592940)
chr6 (138-199)||(2640599-2640660)
chr6 (140-206)||(2634966-2635032)
chr6 (115-200)||(2592998-2593086)
chr6 (140-195)||(2451744-2451799)
[»] scaffold0103 (2 HSPs)
scaffold0103 (15-120)||(4875-4980)
scaffold0103 (140-206)||(4977-5043)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 2568119 - 2568521
Alignment:
Q  1 tctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaattctcaaataagaggtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2568119 tctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacattaacaatattaatacaattctcaaataagaggtgg 2568218  T
Q  101 aattagactacttcaataagaggtaaaacaagattacagtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568219 aattagactacttcaataagaggtaaaacaagattacagtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatata 2568318  T
Q  201 tgatattgagagcaatacaaaataactatatagtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2568319 tgatattgagagcaatacaaaataactatatagtaattaacataggaattgtcttatgtttgaaaaaccaacaattttgatgattgtacaaatgaaattt 2568418  T
Q  301 tttacaagctaagggacaaccaatttccctaaacctcctcaattttattttcaatttcacctgttatcacaacaagtacattatcgatccttctttcttg 400  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  2568419 tttagaagctaagggacaaccaatttccgtaaacctcctcaattttattttcaatttcacctgttatcacaacaagtacatcatcgattcttctttcttg 2568518  T
Q  401 ctt 403  Q
    |||    
T  2568519 ctt 2568521  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 2671720 - 2671846
Alignment:
Q  233 gtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaaggga-caaccaatttcccta 331  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||| ||||||  ||||  ||||||| ||| ||| |||| ||| ||    
T  2671720 gtaattaacataggaattgtgctatgtttgaaaaaccaacaattttgatgattgtacagatgaaaacttttggaagctaaaggagcaaacaatctcctta 2671819  T
Q  332 aacctc--ctcaattttattttcaatt 356  Q
    ||||||  ||||||||| |||||||||    
T  2671820 aacctcttctcaattttcttttcaatt 2671846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 2635134 - 2635029
Alignment:
Q  15 ttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaattctcaaataagaggtggaattagactacttc 114  Q
    ||||||||| || ||||| ||||| |||||||||| ||||||||| ||| |||||||||||||||||| | |||||||| |||| |||  ||||||||||    
T  2635134 ttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaactttcaaataataggttgaacaagactacttc 2635035  T
Q  115 aataag 120  Q
    ||||||    
T  2635034 aataag 2635029  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2593173 - 2593055
Alignment:
Q  1 tctacttcaagttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaattctcaaataagaggtgg 100  Q
    ||||||||||||| |||||||||  | || || ||||| |||||||||| ||||||||| ||| |||||||||||||||||||| | |||||||||||      
T  2593173 tctacttcaagtt-ttctacatcgctagggaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaatttttaaataagaggtta 2593075  T
Q  101 aattagactacttcaataag 120  Q
    ||  ||||||||||||||||    
T  2593074 aacaagactacttcaataag 2593055  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 361
Target Start/End: Complemental strand, 2624444 - 2624311
Alignment:
Q  228 atatagtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaagggacaaccaatttc 327  Q
    |||||||||||| ||||  |||||| ||| ||| |||||||| |||||||||||||||||| |||||  |||||||  |||||||||   ||||||||||    
T  2624444 atatagtaattagcatataaattgtgttatgttagaaaaacctacaattttgatgattgtagaaatg--attttttggaagctaaggtgaaaccaatttc 2624347  T
Q  328 cctaaac--ctcctcaattttattttcaatttcacc 361  Q
     || |||  || ||||||||| ||||||||||||||    
T  2624346 tctgaacttcttctcaattttcttttcaatttcacc 2624311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 2671597 - 2671668
Alignment:
Q  140 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatattgaga 211  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||||  ||||||| |||||||||||| ||||    
T  2671597 taagtgtcatctccctaactccccttattttcaaggtaggagccacaattttaaccatatatgatatagaga 2671668  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 358
Target Start/End: Complemental strand, 2592940 - 2592796
Alignment:
Q  216 tacaaaataactatatagtaattaacataggaattgtcttacgtttgaaaaaccaacaattttgatgattgtacaaatgaaattttttacaagctaaggg 315  Q
    ||||| ||||| ||||||| |||| |||||||||||| ||| ||| || ||||| ||||||||||||||| || |||||||| ||||   ||||||||      
T  2592940 tacaatataaccatatagttattatcataggaattgtgttatgttagacaaacctacaattttgatgattatagaaatgaaaattttaggaagctaagtt 2592841  T
Q  316 acaaccaatttccctaaacctc--ctcaattttattttcaatttc 358  Q
      ||||||||||| | ||||||  |||| |||| |||||||||||    
T  2592840 gaaaccaatttccttgaacctcttctcagttttcttttcaatttc 2592796  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 2640599 - 2640660
Alignment:
Q  138 agtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatat 199  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||    
T  2640599 agtaagtatcatctccctaactccccttattttcaagctggaagccaagattttaatcatat 2640660  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 2635032 - 2634966
Alignment:
Q  140 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat 206  Q
    ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||||||||    
T  2635032 taagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatat 2634966  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 2593086 - 2592998
Alignment:
Q  115 aataagaggtaaaacaagattac---agtaagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatata 200  Q
    |||||||||| |||||||| |||   | ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||    
T  2593086 aataagaggttaaacaagactacttcaataagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatata 2592998  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 2451799 - 2451744
Alignment:
Q  140 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatc 195  Q
    ||||||| || |||| ||||||| ||||| |||||||||||||||| |||||||||    
T  2451799 taagtgtgatttcccaaactccctttattttcaaggtgggagccaatattttaatc 2451744  T

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Target: scaffold0103 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 4875 - 4980
Alignment:
Q  15 ttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacgttaacaatattaatacaattctcaaataagaggtggaattagactacttc 114  Q
    ||||||||| || ||||| ||||| |||||||||| ||||||||| ||| |||||||||||||||||| | |||||||| |||| |||  ||||||||||    
T  4875 ttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaactttcaaataataggttgaacaagactacttc 4974  T
Q  115 aataag 120  Q
    ||||||    
T  4975 aataag 4980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 4977 - 5043
Alignment:
Q  140 taagtgtcatctccctaactcccattattctcaaggtgggagccaagattttaatcatatatgatat 206  Q
    ||||||||||||||||||||||  ||||| || |||||||||||| | ||||| |||||||||||||    
T  4977 taagtgtcatctccctaactccgcttattttctaggtgggagccatggttttattcatatatgatat 5043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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