View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_2 (Length: 617)
Name: NF21239_low_2
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 42184793 - 42185393
Alignment:
| Q |
1 |
atggttctgcatcagttggtaaattatccctttcatcacttgatctatcaatgggaggtagtgccgtgagtgaagaaatgagtactattgaaatgaatgc |
100 |
Q |
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| T |
42184793 |
atggttctgcatcagttggtaaattatccctttcatcacttgatctatcaatgggaggtagtgccgtgagtgaagaaatgagtactattgaaatgaatgc |
42184892 |
T |
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| Q |
101 |
tgcgggtgacgatgatagtaataaaatagcattatcaaattggctcaattcagcacaaccttggttaggttcaacacctggtggtccactagctgaagtt |
200 |
Q |
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| T |
42184893 |
tgcgggtgacgatgatagtactaaaatagcattatcaaattggctcaattcagcacaaccttggttaggttcaacacctggtggtccactagctgaagtt |
42184992 |
T |
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| Q |
201 |
ctaaggccaagcaatgttacttccatcagtgatgcaacaaattctaatccatcttcacctctcacaacaacaaatcgtgtcgaatccattggcacttcag |
300 |
Q |
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| T |
42184993 |
ctaaggccaagcaatgttacttccatcagtgatgcaacaaattctaatccatcttcacctctcacaacaacaaatcgtgtcgaatccattggcacttcag |
42185092 |
T |
|
| Q |
301 |
gaacaggaatggtatcctctccatctggtgttttgcataataaaacacttgcttcattttctgatagtagtggtaatagcagtccaaatgttgcatcatc |
400 |
Q |
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| T |
42185093 |
gaacaggaatggtatcctctccatctggtgttttgcataataaaacacttgcttcattttctgatagtagtggtaatagcagtccaaatgttgcatcatc |
42185192 |
T |
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| Q |
401 |
aagagctaattctgaaattgccttactcaataagtttaatcatatttcatatgtaaattaattaattagcaccttctgcttttaagtttcatttaaccta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42185193 |
aagagctaattctgaaattgccttactcaataagtttaatcatatttcatatgtaaattaattaattagcaccttctgattttaagtttcatttaaccta |
42185292 |
T |
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| Q |
501 |
agattattgttctgttctataatgtaatcttattgtgcttgcatatttatcaaaattcaactatgcattatagcctattgttcagtgatgtttgttgtta |
600 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185293 |
agattattgttctattctgtaatgtaatcttattgtgcttgcatatttatcaaaattcaactatgcattatagcctattgttcagtgatgtttgttgtta |
42185392 |
T |
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| Q |
601 |
t |
601 |
Q |
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| T |
42185393 |
t |
42185393 |
T |
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