View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_21 (Length: 399)

Name: NF21239_low_21
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_21
NF21239_low_21
[»] chr7 (34 HSPs)
chr7 (10-230)||(7727530-7727750)
chr7 (10-230)||(7731690-7731922)
chr7 (271-399)||(5015455-5015583)
chr7 (266-398)||(16180264-16180396)
chr7 (266-399)||(44416841-44416974)
chr7 (267-399)||(43343532-43343664)
chr7 (10-113)||(7739848-7739951)
chr7 (273-399)||(24000926-24001052)
chr7 (273-399)||(32029731-32029857)
chr7 (273-399)||(42538345-42538471)
chr7 (266-399)||(5810831-5810964)
chr7 (267-399)||(41861736-41861868)
chr7 (266-399)||(4638106-4638239)
chr7 (266-399)||(44326238-44326371)
chr7 (267-399)||(26898310-26898442)
chr7 (273-399)||(42972912-42973038)
chr7 (266-399)||(35069781-35069914)
chr7 (266-399)||(45326080-45326213)
chr7 (273-399)||(27393174-27393300)
chr7 (22-113)||(7699674-7699765)
chr7 (273-399)||(9216361-9216487)
chr7 (285-399)||(38160505-38160619)
chr7 (267-398)||(10573810-10573941)
chr7 (266-379)||(47279631-47279744)
chr7 (267-399)||(43317503-43317635)
chr7 (22-105)||(7714019-7714102)
chr7 (341-398)||(24280578-24280635)
chr7 (267-399)||(5194139-5194271)
chr7 (166-221)||(7739995-7740050)
chr7 (221-264)||(7727843-7727886)
chr7 (266-331)||(40237047-40237112)
chr7 (266-331)||(27535138-27535203)
chr7 (266-331)||(31408540-31408605)
chr7 (266-331)||(31513415-31513480)
[»] chr3 (26 HSPs)
chr3 (266-399)||(36150190-36150323)
chr3 (267-399)||(40808925-40809057)
chr3 (266-399)||(46941113-46941246)
chr3 (266-399)||(42394326-42394459)
chr3 (266-399)||(47190933-47191066)
chr3 (267-399)||(54237156-54237288)
chr3 (266-399)||(25413741-25413874)
chr3 (266-399)||(52629888-52630021)
chr3 (267-399)||(24688310-24688442)
chr3 (267-399)||(40480809-40480941)
chr3 (267-399)||(53581766-53581898)
chr3 (267-399)||(45126836-45126968)
chr3 (266-399)||(54246055-54246188)
chr3 (275-399)||(42100748-42100872)
chr3 (267-399)||(27748623-27748746)
chr3 (266-365)||(1078312-1078411)
chr3 (266-399)||(53273600-53273724)
chr3 (268-399)||(51249368-51249499)
chr3 (22-110)||(12907694-12907782)
chr3 (266-399)||(11064629-11064762)
chr3 (267-331)||(9434252-9434316)
chr3 (270-331)||(19148896-19148957)
chr3 (266-304)||(29556866-29556904)
chr3 (267-329)||(54429173-54429235)
chr3 (266-331)||(10457799-10457864)
chr3 (267-331)||(51757721-51757784)
[»] chr1 (22 HSPs)
chr1 (257-399)||(4401388-4401530)
chr1 (267-399)||(5489836-5489968)
chr1 (267-399)||(48498870-48499002)
chr1 (266-399)||(24769406-24769539)
chr1 (267-399)||(43570994-43571126)
chr1 (266-399)||(7447885-7448018)
chr1 (266-399)||(750212-750345)
chr1 (268-399)||(37814838-37814969)
chr1 (266-399)||(2497469-2497602)
chr1 (266-399)||(50448167-50448300)
chr1 (267-399)||(23989431-23989563)
chr1 (266-399)||(4888103-4888235)
chr1 (266-331)||(45427652-45427717)
chr1 (266-331)||(26585590-26585655)
chr1 (266-331)||(35003422-35003487)
chr1 (266-331)||(38336046-38336111)
chr1 (266-331)||(41065279-41065344)
chr1 (266-331)||(44112805-44112870)
chr1 (267-331)||(45705953-45706017)
chr1 (267-324)||(45639640-45639697)
chr1 (270-331)||(48119756-48119817)
chr1 (267-303)||(35000021-35000057)
[»] chr4 (36 HSPs)
chr4 (266-399)||(28982729-28982862)
chr4 (267-399)||(35017792-35017924)
chr4 (266-399)||(27864624-27864757)
chr4 (267-399)||(33703201-33703333)
chr4 (266-399)||(1771173-1771306)
chr4 (266-399)||(27550369-27550502)
chr4 (267-399)||(25051753-25051885)
chr4 (267-399)||(43949709-43949841)
chr4 (267-397)||(43514594-43514724)
chr4 (266-399)||(23036040-23036173)
chr4 (266-399)||(43735802-43735935)
chr4 (267-399)||(27893750-27893882)
chr4 (266-399)||(55966253-55966386)
chr4 (266-399)||(31680962-31681095)
chr4 (267-399)||(51512173-51512305)
chr4 (285-399)||(39631161-39631275)
chr4 (270-399)||(48463361-48463490)
chr4 (273-399)||(12497016-12497142)
chr4 (266-399)||(27316619-27316753)
chr4 (267-399)||(23204686-23204818)
chr4 (266-398)||(21687067-21687199)
chr4 (272-396)||(41848034-41848158)
chr4 (279-399)||(46412389-46412509)
chr4 (271-399)||(45490225-45490353)
chr4 (266-396)||(28988536-28988665)
chr4 (266-399)||(41878466-41878592)
chr4 (266-399)||(56215805-56215937)
chr4 (294-396)||(41327478-41327580)
chr4 (263-331)||(19880082-19880150)
chr4 (267-331)||(55272284-55272348)
chr4 (266-305)||(32728511-32728550)
chr4 (268-331)||(35037133-35037195)
chr4 (266-331)||(17619059-17619124)
chr4 (271-331)||(712088-712148)
chr4 (269-305)||(960753-960789)
chr4 (267-331)||(48435487-48435551)
[»] chr5 (13 HSPs)
chr5 (267-399)||(41334571-41334703)
chr5 (273-399)||(2614563-2614689)
chr5 (292-399)||(22512365-22512472)
chr5 (266-399)||(5257055-5257188)
chr5 (267-399)||(18034042-18034174)
chr5 (266-399)||(33801529-33801662)
chr5 (266-399)||(7617193-7617326)
chr5 (273-399)||(38470639-38470765)
chr5 (266-365)||(25914903-25915002)
chr5 (266-372)||(39122263-39122369)
chr5 (307-398)||(39122381-39122472)
chr5 (267-331)||(30622627-30622691)
chr5 (268-331)||(32473303-32473366)
[»] chr6 (17 HSPs)
chr6 (266-399)||(21279989-21280122)
chr6 (267-399)||(24203895-24204027)
chr6 (268-398)||(30014404-30014534)
chr6 (271-399)||(7292807-7292935)
chr6 (267-399)||(30736042-30736174)
chr6 (273-399)||(9698247-9698373)
chr6 (266-399)||(26669916-26670049)
chr6 (268-399)||(13743130-13743261)
chr6 (268-399)||(13748630-13748761)
chr6 (273-399)||(7367609-7367735)
chr6 (266-399)||(3213460-3213593)
chr6 (266-399)||(7273242-7273375)
chr6 (266-399)||(21293584-21293717)
chr6 (266-397)||(26466861-26466992)
chr6 (266-324)||(33254049-33254107)
chr6 (267-331)||(33242531-33242595)
chr6 (266-331)||(27441670-27441735)
[»] chr8 (24 HSPs)
chr8 (268-399)||(42197344-42197475)
chr8 (273-399)||(29705422-29705548)
chr8 (266-399)||(36743390-36743523)
chr8 (267-399)||(2547056-2547188)
chr8 (267-398)||(31384725-31384856)
chr8 (273-399)||(11582826-11582952)
chr8 (266-399)||(20148820-20148953)
chr8 (266-399)||(30660649-30660782)
chr8 (267-399)||(9241612-9241744)
chr8 (271-399)||(29800862-29800990)
chr8 (266-397)||(30912469-30912600)
chr8 (273-399)||(2165877-2166003)
chr8 (268-399)||(26125695-26125825)
chr8 (266-399)||(45397376-45397508)
chr8 (267-399)||(42295255-42295386)
chr8 (267-398)||(3743832-3743963)
chr8 (290-399)||(5754963-5755072)
chr8 (266-399)||(1375602-1375735)
chr8 (267-396)||(40528542-40528671)
chr8 (266-331)||(34304916-34304980)
chr8 (267-331)||(10678060-10678124)
chr8 (363-399)||(42699317-42699353)
chr8 (266-331)||(35181644-35181709)
chr8 (267-331)||(33629901-33629965)
[»] scaffold0038 (1 HSPs)
scaffold0038 (266-399)||(112715-112848)
[»] chr2 (27 HSPs)
chr2 (266-399)||(19047217-19047350)
chr2 (266-399)||(30838692-30838825)
chr2 (266-398)||(4764633-4764765)
chr2 (268-399)||(42849768-42849898)
chr2 (273-399)||(12302167-12302293)
chr2 (267-399)||(43335671-43335803)
chr2 (266-399)||(43490308-43490441)
chr2 (267-399)||(1750474-1750606)
chr2 (267-399)||(16096807-16096940)
chr2 (266-399)||(39149201-39149332)
chr2 (266-396)||(34817683-34817813)
chr2 (273-399)||(42026829-42026955)
chr2 (300-399)||(13780676-13780775)
chr2 (267-331)||(12415368-12415432)
chr2 (267-331)||(12427428-12427492)
chr2 (266-331)||(34895648-34895713)
chr2 (318-398)||(8896542-8896622)
chr2 (267-331)||(11825562-11825626)
chr2 (266-324)||(18491840-18491898)
chr2 (266-331)||(6518401-6518466)
chr2 (266-331)||(41281881-41281946)
chr2 (267-331)||(966742-966806)
chr2 (267-331)||(43114685-43114749)
chr2 (267-331)||(16804096-16804160)
chr2 (267-331)||(16843378-16843442)
chr2 (293-356)||(19930830-19930894)
chr2 (291-334)||(27864728-27864772)
[»] scaffold0187 (2 HSPs)
scaffold0187 (267-399)||(14097-14228)
scaffold0187 (267-399)||(24425-24556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (266-399)||(745-878)
[»] scaffold0385 (1 HSPs)
scaffold0385 (267-399)||(11311-11443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (273-399)||(23335-23461)
[»] scaffold0003 (1 HSPs)
scaffold0003 (266-331)||(45626-45691)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 7727530 - 7727750
Alignment:
Q  10 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatcttaattt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  7727530 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacttgtttggaggagtcttcatcttaattt 7727629  T
Q  110 tggacnnnnnnncttatgaagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatggttttaagctttgctatttatagaatt 209  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7727630 tggagtttttttcttatgaagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatggttttaatctttgctatttatagaatt 7727729  T
Q  210 cgtagcagccaggaggtatat 230  Q
    |||||||||||||| ||||||    
T  7727730 cgtagcagccaggatgtatat 7727750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 7731690 - 7731922
Alignment:
Q  10 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatcttaattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7731690 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggagtagtcttcatcttaattt 7731789  T
Q  110 tg-gacnnnnnnnct---------tatgaagaggtggtttgag-tttgggttgagagagtactcaagtttgggtgataagta-tggttttaagctttgct 197  Q
    || ||         |         ||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||| |  ||||||||||||||    
T  7731790 tgagagttttttagttgaaaaaaatatgaagaggtggtttgagctttgtgttaagagagtactcaagtttgggtgattagtattaattttaagctttgct 7731889  T
Q  198 atttatagaattcgtagcagccaggaggtatat 230  Q
    |||||||||||||||||  ||||||| ||||||    
T  7731890 atttatagaattcgtagtcgccaggatgtatat 7731922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 5015583 - 5015455
Alignment:
Q  271 ggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtg 370  Q
    ||||||||||||||||||||||||||||||||||| |||| |  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||    
T  5015583 ggtgatacatgtaccaccccatgtggcaatacaccttttacactcacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataaagtg 5015484  T
Q  371 tggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||    
T  5015483 tggttgtgagatgaacttaccaaaatatc 5015455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 16180264 - 16180396
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  16180264 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 16180363  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatat 398  Q
    |||||||||||||||||||| ||||||||||||    
T  16180364 aagtgtggttgtgagatgaatttaccaaaatat 16180396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 44416841 - 44416974
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||| | || |||||||||||||||||||||||||    
T  44416841 agagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaatttctgacacgtggcaacttggaccccacacaaatagaagata 44416940  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| |||||||||    
T  44416941 aagtgtggttgtgagatgaacttatcaaaatatc 44416974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 43343532 - 43343664
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||| | || ||||||||||||||||||||||||||    
T  43343532 gagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaatttctgacacgtggcaacttggaccccacacaaatagaagataa 43343631  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||| |||||||||    
T  43343632 agtgtggttgtgagatgaacttatcaaaatatc 43343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 7739848 - 7739951
Alignment:
Q  10 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatcttaattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  7739848 acatcatcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacttgtttggagtagtcttcatcttaattt 7739947  T
Q  110 tgga 113  Q
    ||||    
T  7739948 tgga 7739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 24000926 - 24001052
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||    
T  24000926 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 24001025  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  24001026 gttgtgagatgaacttaccaaaatatc 24001052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 32029731 - 32029857
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || |||||||||||| |||||||||||||||||||    
T  32029731 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataaagtgtg 32029830  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    ||||| ||||||| |||||||||||||    
T  32029831 gttgttagatgaatttaccaaaatatc 32029857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 42538345 - 42538471
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||    
T  42538345 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 42538444  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  42538445 gttgtgagatgaacttaccaaaatatc 42538471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 5810831 - 5810964
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||| || | || |||||||||||||||||||||||||    
T  5810831 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacatgtggcaacttggaccccacacaaatagaagata 5810930  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| |||||||||    
T  5810931 aagtgtggttgtgagatgaacttatcaaaatatc 5810964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 41861868 - 41861736
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||| | ||  ||||||||| |||||||||||||||    
T  41861868 gagtggtgatacatgtaccactccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccatacaaatagaagataa 41861769  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||| ||||||||||||||||    
T  41861768 agtgtggttgtgagataaacttaccaaaatatc 41861736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 4638106 - 4638239
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||||| | ||| |||||||||||||| ||||| |||| |||||||||||| ||||  | ||||||||||||||||||||||    
T  4638106 agagtggtgatacatgtaccaccctacgtgacaatacaccctttacatccatacaagattctgacacgtggtaacctagaccccacacaaatagaagata 4638205  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||| |||||||||||||||||||||||||||||    
T  4638206 aagtatggttgtgagatgaacttaccaaaatatc 4638239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 44326371 - 44326238
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||| | ||  |||| |||||| ||||||| ||||    
T  44326371 agagtggtgatacatgtaccacaccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggatcccacataaatagatgata 44326272  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  44326271 aagtgtggttgtgagatgaacttaccaaaatatc 44326238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 26898310 - 26898442
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||||||| || ||||||||||||||| |||| | ||||| ||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  26898310 gagtggtgatacatgtaccatcctatgtggcaatacaccttttacacccacataaaattctgacacgtggtaacctggaccccacacaaatagaatataa 26898409  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||| |||||||||||||||||||||    
T  26898410 agtgtggttgtaagatgaacttaccaaaatatc 26898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 42973038 - 42972912
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||| | || ||||||||||||||| |||| | ||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||    
T  42973038 tgatacatgtactatcctatgtggcaatacaccatttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataaaatgtg 42972939  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  42972938 gttgtgagatgaacttaccaaaatatc 42972912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 35069914 - 35069781
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||| || ||||||||||| | |||||| ||| ||||||||||||||||||| | || ||||||| |||| ||||||||||||    
T  35069914 agagtgatgatacatgtaccatcctatgtggcaatatatcctttacatctacacaaaattctgacacgtggcaacttggacctcacataaatagaagata 35069815  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  35069814 aagtgtggttgtgagatgaacttaccaaaatatc 35069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 45326213 - 45326080
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||| || |||   ||||||||||| ||||||||||||    
T  45326213 agagtggtgatacatgtaccaccccatgtgacaatacaccatttacacccacataaaattctgacaggtggtagtctggaccccacataaatagaagata 45326114  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||| ||||||||||||||||||||||||||    
T  45326113 aagtgtgattgtgagatgaacttaccaaaatatc 45326080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 27393174 - 27393300
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||| |  | ||  ||||||||||| |||||||||||||||||||    
T  27393174 tgatacatgtaccaccccatgtggcaatacatcctttacacccacataaaattctgacatgaggcaacctggaccccacataaatagaagataaagtgtg 27393273  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||| ||||||||    
T  27393274 gttgtgagatgaacttacaaaaatatc 27393300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7699674 - 7699765
Alignment:
Q  22 tttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatcttaattttgga 113  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7699674 tttgatttggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacatgtttggagaagtcttcatcttaattttgga 7699765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 9216487 - 9216361
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||| || |||||||||||||| ||||||||| |||| |||||||||||||||||||| |  | || ||  ||||||||||||||||||||||| ||||    
T  9216487 tgatatatataccaccccatgtgacaatacaccttttacatccacacaaaattctgacatgcggcaacttaaaccccacacaaatagaagataaaatgtg 9216388  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  9216387 gttgtgagatgaacttaccaaaatatc 9216361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 38160505 - 38160619
Alignment:
Q  285 caccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatga 384  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||||||| | || |||||||||||| |||||||||||||||||| ||||||||||||    
T  38160505 caccccatgtggcaatacaccccttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataaagtgtagttgtgagatga 38160604  T
Q  385 acttaccaaaatatc 399  Q
    | |||| ||||||||    
T  38160605 agttactaaaatatc 38160619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 10573941 - 10573810
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||||||||| |||||| ||||| | |||||| | ||||| |||||||||| | || | ||  | ||||||||| |||||||||||||    
T  10573941 gagtggtgatacatgtaccaccgcatgtgacaatatatcctttacacccacataaaattctgatatgtggcaatcttgaccccacataaatagaagataa 10573842  T
Q  367 agtgtggttgtgagatgaacttaccaaaatat 398  Q
    ||||||||||||||||||| ||||||||||||    
T  10573841 agtgtggttgtgagatgaatttaccaaaatat 10573810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 47279631 - 47279744
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||| ||||| |||||||||| | || ||||  |||| || | | ||||||||||||    
T  47279631 agagtggtgatacatgtaccatcccatctgacaatacaccctttatacccacataaaattctgatatgtggtaatctggatcctatataaatagaagata 47279730  T
Q  366 aagtgtggttgtga 379  Q
    ||||||||||||||    
T  47279731 aagtgtggttgtga 47279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 43317635 - 43317503
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||||||||||||||||  ||   ||||||||||||||| ||| | |||||||||||||||||| || | ||  | ||||||||||||||||||||  |    
T  43317635 gagtggtgatacatgtacacccttgtgtggcaatacaccccttacacccacacaaaattctgacatgtggcaatctagaccccacacaaatagaagagta 43317536  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| |||||||||||| ||| |||||||||    
T  43317535 agtgtgattgtgagatgaatttatcaaaatatc 43317503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 7714019 - 7714102
Alignment:
Q  22 tttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatctta 105  Q
    |||||| ||||||||||||||||||||||||||| |||||| | |  |||||| | ||||||||||||||||||||||||||||    
T  7714019 tttgatttggagaagtagatggaagaaaggaagaagagtgttaggctgagtagcataaacatgtttggaggagtcttcatctta 7714102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 24280578 - 24280635
Alignment:
Q  341 ttggaccccacacaaatagaagataaagtgtggttgtgagatgaacttaccaaaatat 398  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  24280578 ttggaccccacacaaatagaagagaaagtgtgattgtgagatgaatttaccaaaatat 24280635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 5194139 - 5194271
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||| |||||||||||||  ||   |||||||||||| || ||| | |||||||||||| ||||| || | ||  | ||||||||||||||||||||  |    
T  5194139 gagtagtgatacatgtacacccttgtgtggcaatacaacccttacacccacacaaaattttgacatgtggcaatctagaccccacacaaatagaagagta 5194238  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| |||||||||||| ||| |||||||||    
T  5194239 agtgtgattgtgagatgaatttatcaaaatatc 5194271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 7739995 - 7740050
Alignment:
Q  166 tttgggtgataagtatggttttaagctttgctatttatagaattcgtagcagccag 221  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  7739995 tttgggtgataagtatgattttaagctttgctatttatagaaaacgtagcagccag 7740050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 7727843 - 7727886
Alignment:
Q  221 ggaggtatatgtggagtaaagggctgctaccacaatatatcatt 264  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  7727843 ggaggtgtatgtggagtaaagggctgctaccacaatatatcatt 7727886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 40237112 - 40237047
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  40237112 agagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 40237047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 27535138 - 27535203
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||   | ||||||||||||||| |  ||| ||||||||||||||||||||    
T  27535138 agagtggtgatacatgtattcctccatgtggcaatacatctcttacatccacacaaaattctgaca 27535203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 31408540 - 31408605
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  ||||||||| |||||||||  ||| | ||||| ||||| ||||||    
T  31408540 agagtggtgatacatgtacacccccatgtgacaatacacctcttacacccacataaaatcctgaca 31408605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 31513480 - 31513415
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  ||  |||||||||||||||  ||| ||| ||||||||| ||||||    
T  31513480 agagtggtgatacatgtacacccttatgtggcaatacacctcttacatctacacaaaatcctgaca 31513415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 36150323 - 36150190
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||  ||||| ||||||||||||||||||    
T  36150323 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 36150224  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  36150223 aagtgtggttgtgagatgaacttaccaaaatatc 36150190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 40809057 - 40808925
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  40809057 gagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 40808958  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  40808957 agtgtggttgtgagatgaacttaccaaaatatc 40808925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 46941246 - 46941113
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||| | || |||||||||||||||||||||||||    
T  46941246 agagtgatgatacatgtaccaccccatgtggcaatacactctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagata 46941147  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  46941146 aagtgtggttgtgagatgaacttaccaaaatatc 46941113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 42394326 - 42394459
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| | ||  ||||||||||||||||||||||||    
T  42394326 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 42394425  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  42394426 aagtgtggttgtgagatgaacttaccaaaatatc 42394459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 47190933 - 47191066
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  47190933 agagtgatgatacatgtaccattccatgtggcaatacaccctttacacccacacaaaattctgacatgtggtaacttggaccccacacaaatagaagata 47191032  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| |||||||||    
T  47191033 aagtgtggttgtgagatgaacttatcaaaatatc 47191066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 54237288 - 54237156
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||| | ||  |||||||||||||||||||||||||    
T  54237288 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaatattctgacacgtggcaatctggaccccacacaaatagaagataa 54237189  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  54237188 agtgtggttgtgagatgaacttaccaaaatatc 54237156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 25413874 - 25413741
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||| || |||||||||||||| | |||||||||| |||||||||| ||||  ||||||||||||||||||||||||    
T  25413874 agagtgatgatacatgtaccaccccatatgacaatacaccctttacacccacacaaaactctgacacgtggtaacctggaccccacacaaatagaagata 25413775  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||| ||||||||    
T  25413774 aagtgtggttgtgagatgaacttacaaaaatatc 25413741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 52630021 - 52629888
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||  ||||||| ||| ||||||||||||    
T  52630021 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtagcaacctggaccctacataaatagaagata 52629922  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||| ||||||||    
T  52629921 aagtgtggttgtgagatgaacttacaaaaatatc 52629888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 24688310 - 24688442
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||| | ||  ||||||||||| |||||||||||||    
T  24688310 gagtgatgatacatgtaccaccccatgtggcaatacaccatttacccccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 24688409  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  24688410 agtgtggttgtgagatgaacttaccaaaatatc 24688442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 40480941 - 40480809
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| | ||  ||||||| |||||||||||||||||    
T  40480941 gagtgatgatacatgtatcaccccatgcggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggaccctacacaaatagaagataa 40480842  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  40480841 agtgtggttgtgagatgaacttaccaaaatatc 40480809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 53581766 - 53581898
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  53581766 gagtgatgatacctgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 53581865  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||| |||||||||    
T  53581866 agtgtggttgtgagatgaacttatcaaaatatc 53581898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 45126836 - 45126968
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||| || || ||||  ||||||||||| |||||||| ||||    
T  45126836 gagtggtgatacatgtaccactccatgtggcaatacaccctttacacccacataaaattctggcatgtggtaatctggaccccacataaatagaaaataa 45126935  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  45126936 agtgtggttgtgagatgaacttaccaaaatatc 45126968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 54246055 - 54246188
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||  ||||| | ||||| |||||||||||| || | ||  ||||||||||||||||||||||||    
T  54246055 agagtgatgatacatgtaccaccccatgtggcaatacattctttacacccacataaaattctgacatgtggcaacctggaccccacacaaatagaagata 54246154  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||| ||||||||    
T  54246155 aagtgtggttgtgagatgaacttacaaaaatatc 54246188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 42100872 - 42100748
Alignment:
Q  275 atacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggt 374  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||| | ||  || || ||||||||||| |||||||| ||||||    
T  42100872 atacatgtaccacctcatgtggcaatgcaccctttacacccacataaaattctgacacgtggcaacctgaactccacacaaataaaagataaaatgtggt 42100773  T
Q  375 tgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||    
T  42100772 tgtgagatgaacttaccaaaatatc 42100748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 27748746 - 27748623
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||| || | ||  |||||||||||||||||||||||||    
T  27748746 gagtggtgatacatgtaccaccccatgtggcaatacaccg---------acacaaaattctgacatgtggcaacctggaccccacacaaatagaagataa 27748656  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||| | |||||||||||||||||||||||||||    
T  27748655 agtattgttgtgagatgaacttaccaaaatatc 27748623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 1078411 - 1078312
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||  || || ||||||||||||||||||    
T  1078411 agagtgatgatacatgtaccacctcatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgaactccacacaaatagaagata 1078312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 53273600 - 53273724
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||| ||||||||||||||||||          |||||||||||||| |||| ||||  |||| |||||| ||||| ||||||    
T  53273600 agagtgatgatacatgtaccatcccatgtggcaatacacct---------acacaaaattctgatacgtggtaacctggatcccacataaataaaagata 53273690  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||| |||||||||||||||||||||||||||||    
T  53273691 aagtatggttgtgagatgaacttaccaaaatatc 53273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 51249499 - 51249368
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    ||||||||||||||||   || ||| ||  ||||||| | ||| || || |||||||||||||| || | ||  |||| ||||||||||||||||| |||    
T  51249499 agtggtgatacatgtatatcctcatatgataatacactccttacattcatacaaaattctgacatgtggcaatctggatcccacacaaatagaagagaaa 51249400  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||| |||||||||||||    
T  51249399 gtgtggttgtgagatgaatttaccaaaatatc 51249368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 12907782 - 12907694
Alignment:
Q  22 tttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggaggagtcttcatcttaatttt 110  Q
    |||||| | |||||||| ||| |||| ||||||| |||||| || |||||||| ||||||||||| |||| ||||||||||||||||||    
T  12907782 tttgatttagagaagtatatgaaagagaggaagatgagtgttaactggagtagaagaaacatgttaggagaagtcttcatcttaatttt 12907694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 11064629 - 11064762
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||   |   |||| |||||||||| ||| | |||||||||||| ||||| || ||||  | ||||||||||||||||||||      
T  11064629 agagtggtgatacatgtacactcttgtgtgacaatacaccccttacacccacacaaaattttgacatgtggtaatctagaccccacacaaatagaagagt 11064728  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||| || ||||||||| | | |||||||||    
T  11064729 aagtgtgattatgagatgaattaatcaaaatatc 11064762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 9434316 - 9434252
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||   ||||||||||||||||||  ||| | ||||||||||||||||||    
T  9434316 gagtggtgatacatgtacactcccatgtggcaatacacctcttacacccacacaaaattctgaca 9434252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 19148957 - 19148896
Alignment:
Q  270 tggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||| ||||||||  |||||||||||||||||||  ||| | ||||||||||||||||||    
T  19148957 tggtgacacatgtacacccccatgtggcaatacaccacttacacccacacaaaattctgaca 19148896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 29556866 - 29556904
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacac 304  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  29556866 agagtggtgatacatgtaccactacatgtggcaatacac 29556904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 54429173 - 54429235
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctga 329  Q
    |||||| |||||||||||  |||||| ||||||||||||  ||| | ||||||||||||||||    
T  54429173 gagtggcgatacatgtacacccccatatggcaatacacctcttacacccacacaaaattctga 54429235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 10457799 - 10457864
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||| |||||||||||   || ||||||||||||||||  ||| ||||||||||||| ||||||    
T  10457799 agagtgttgatacatgtataccctcatgtggcaatacacctcttacatccacacaaaatcctgaca 10457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 51757784 - 51757721
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||| |||||||||||||||| |||  ||| | ||||||| ||| ||||||    
T  51757784 gagtggtgatacatgtac-accccatgtggcaatatacctcttacacccacacacaatcctgaca 51757721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 4401530 - 4401388
Alignment:
Q  257 atatcattgagagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaa 356  Q
    |||||| | |||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | | |||||||||||||||||    
T  4401530 atatcaattagagtgatgatacatgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcatattggaccccacacaaa 4401431  T
Q  357 tagaagataaagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4401430 tagaagataaagtgtggttgtgagatgaacttaccaaaatatc 4401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 5489968 - 5489836
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||||||||||    
T  5489968 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 5489869  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  5489868 agtgtggttgtgagatgaacttaccaaaatatc 5489836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 48498870 - 48499002
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||||||||||    
T  48498870 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 48498969  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  48498970 agtgtggttgtgagatgaacttaccaaaatatc 48499002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 24769406 - 24769539
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  24769406 agagtgatgatacatgtaccaccccatgtggcaatacactctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 24769505  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||| | |||||||||||||||||    
T  24769506 aagtgtggttgtgataagaacttaccaaaatatc 24769539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 43570994 - 43571126
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | || ||||||||||||||||||||||||||    
T  43570994 gagtgatgatatatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaacttggaccccacacaaatagaagataa 43571093  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  43571094 agtgtggttgtgagatgaacttaccaaaatatc 43571126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 7448018 - 7447885
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||  |||||||||||||||||||||| | ||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  7448018 agagtgatgatacatgtaccattccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 7447919  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| |||||||||    
T  7447918 aagtgtggttgtgagatgaacttatcaaaatatc 7447885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 750212 - 750345
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  750212 agagtgatgatacatgtaccatcccatgtggcaatacaccctttacacccacacaaaattctgacacgtggtaacatggaccccacacaaatagaagata 750311  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||| ||||||||| ||| |||||||||    
T  750312 aagtgtggttttgagatgaatttatcaaaatatc 750345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 37814969 - 37814838
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| | ||  ||||||||||| ||||||||||||||    
T  37814969 agtggtgatacatgtaccaccccatgtggcaatacaccctttacatccatataaaattctgacacgtggcaatctggaccccacataaatagaagataaa 37814870  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||| ||||| |||||||||||||    
T  37814869 gtgtggttgtgaaatgaatttaccaaaatatc 37814838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 2497469 - 2497602
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||   ||  |||| |||||| ||||||| ||||    
T  2497469 agagtggtgatacatgtaccacaccatgtggcaatacaccctttatacccacataaaattctgacacgtgacaatctggatcccacataaatagatgata 2497568  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  2497569 aagtgtggttgtgagatgaacttaccaaaatatc 2497602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 50448167 - 50448300
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||  |||| |||||| ||||||||||||    
T  50448167 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacatggaacccacaaaaatagaagata 50448266  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    || ||||||||| |||||||||||| ||||||||    
T  50448267 aaatgtggttgtaagatgaacttacaaaaatatc 50448300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 23989431 - 23989563
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||||||||||||||||||||| || ||||||||||||||||| | |||||||| ||||||||| || | ||  |||||||||||||||||||||||||    
T  23989431 gagtggtgatacatgtaccaccctatatggcaatacaccctttacacccacacaagattctgacatgtggcaacctggaccccacacaaatagaagataa 23989530  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||| || |||||||||||||    
T  23989531 agtgtggttgtgagataaatttaccaaaatatc 23989563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 4888235 - 4888103
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||| || | | || |||||| |||||||||||||| |||    
T  4888235 agagtgatgatacatgtaccaccc-atgtggcaatatatcctttacatccacacaaaattctgatacatggcaatttggacaccacacaaatagaaaata 4888137  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||| ||||||||||||||||    
T  4888136 aagtgtggttgtgagataaacttaccaaaatatc 4888103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 45427652 - 45427717
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |||||||||||||||||||  ||  ||||||||||||| ||||||    
T  45427652 agagtggtgatacatgtacatccccatgtggcaatacacctcttccatccacacaaaatcctgaca 45427717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 26585655 - 26585590
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  ||||||| ||||||||| |  ||| ||||||||||||| ||||||    
T  26585655 agagtggtgatacatgtacacccccatgcggcaatacatctcttacatccacacaaaatcctgaca 26585590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 35003487 - 35003422
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||| ||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  35003487 agagtggtgatacatgcacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 35003422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 38336111 - 38336046
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||| |||||  ||| |||||||||||||||  |||||| |||||||||| ||||||    
T  38336111 agagtggtgatacttgtacacccctatgtggcaatacacctcttatattcacacaaaatcctgaca 38336046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 41065344 - 41065279
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||| ||||||  |||||||||||||||||||  ||| |||| |||||||| ||||||    
T  41065344 agagtggtgatatatgtacacccccatgtggcaatacacctcttacatccgcacaaaatcctgaca 41065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 44112870 - 44112805
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |  ||||||||||||||||  ||| | ||||||||||||||||||    
T  44112870 agagtggtgatacatgtacaccttcatgtggcaatacacctcttacacccacacaaaattctgaca 44112805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 45706017 - 45705953
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  | |||||||||||||||||  ||| | ||||||||||| ||||||    
T  45706017 gagtggtgatacatgtacacctccatgtggcaatacacctcttacacccacacaaaatcctgaca 45705953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 45639640 - 45639697
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaat 324  Q
    ||||||||||||||||||  |||| ||||||||||||||  ||| | |||||||||||    
T  45639640 gagtggtgatacatgtacacccccttgtggcaatacacctcttacacccacacaaaat 45639697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 48119817 - 48119756
Alignment:
Q  270 tggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||  ||||| |||||||||||||  ||| | ||||||||||| ||||||    
T  48119817 tggtgatacatgtacacccccacgtggcaatacacctcttacacccacacaaaatcctgaca 48119756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 35000021 - 35000057
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaataca 303  Q
    ||||||||||||||||||  |||||||||||||||||    
T  35000021 gagtggtgatacatgtacacccccatgtggcaataca 35000057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 28982729 - 28982862
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  28982729 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 28982828  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||| ||||||||||||||||||||||||||||    
T  28982829 aagtgcggttgtgagatgaacttaccaaaatatc 28982862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 35017924 - 35017792
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||    
T  35017924 gagtgatgatacatgtaccaccccatgtggcaatacatcttttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataa 35017825  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  35017824 agtgtggttgtgagatgaacttaccaaaatatc 35017792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 27864757 - 27864624
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||  || |||||||| |||||||| |||    
T  27864757 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacatccacataaaattctgacatgtggtaatctgaaccccacataaatagaaaata 27864658  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  27864657 aagtgtggttgtgagatgaacttaccaaaatatc 27864624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 33703333 - 33703201
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| | || ||||| ||| ||||||||||||||||    
T  33703333 gagtgatgatacatgtaccaccccatatggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggatcccgcacaaatagaagataa 33703234  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  33703233 agtgtggttgtgagatgaacttaccaaaatatc 33703201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 1771173 - 1771306
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| | || |||||||||||| ||||||||||||    
T  1771173 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgagacgtggcaacttggaccccacataaatagaagata 1771272  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    || ||||||||||||||||||||| |||||||||    
T  1771273 aaatgtggttgtgagatgaacttatcaaaatatc 1771306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 27550502 - 27550369
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  27550502 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccacataaatagaagata 27550403  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||| |||||||||||||||||||||    
T  27550402 aagtgtggttgtaagatgaacttaccaaaatatc 27550369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 25051885 - 25051753
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| | || |||||||||||| |||||||||||||    
T  25051885 gagtgatgatacatgtaccaccccacgtggcaatacatcatttacatccacacaaaattctgacacgtggcaacttggaccccacataaatagaagataa 25051786  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| ||||||||||||||||||||||||||    
T  25051785 agtgtgattgtgagatgaacttaccaaaatatc 25051753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 43949709 - 43949841
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||| | | |||||| ||| ||||||||||||||||    
T  43949709 gagtgatgatacatgtaccaccctatttggcaatacaccctttatacccatacaaaattctgacacgtggcatattggatcccgcacaaatagaagataa 43949808  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  43949809 agtgtggttgtgagatgaacttaccaaaatatc 43949841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 43514594 - 43514724
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||  | |||||||||||||||||||||||    
T  43514594 gagtgatgatacatgtaccaccccatgtggcaatacactctttacatccacaaaaaattctgacacgtggcaacctagaccccacacaaatagaagataa 43514693  T
Q  367 agtgtggttgtgagatgaacttaccaaaata 397  Q
     ||||||||||||||||||||||||||||||    
T  43514694 ggtgtggttgtgagatgaacttaccaaaata 43514724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 23036173 - 23036040
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  23036173 agagtgatgatacatgtaccaccccatgtggcaacacatcctttacacccacacaaaattctgacacgtggcaacctggaccccacataaatagaagata 23036074  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||| ||||||||    
T  23036073 aagtgtggttgtgagatgaacttacaaaaatatc 23036040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 43735935 - 43735802
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||   || ||||| |||||||||||||||||||    
T  43735935 agagtgatgatacatgtaccaccccacgtggcaatacaccctttacatccacataaaattctgacacgtgacaacttggatcccacacaaatagaagata 43735836  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||| |||||||||||||||| |||||||||    
T  43735835 aagtgtgattgtgagatgaacttatcaaaatatc 43735802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 27893750 - 27893882
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| || | ||  | ||||||||| |||||||||||||    
T  27893750 gagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagataa 27893849  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||| |||||||||||||    
T  27893850 agtgtggttgtgagatgaaattaccaaaatatc 27893882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 55966253 - 55966386
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||| || | ||  | ||||||||| ||||||||||||    
T  55966253 agagtggtgatacatgtaccactccatgtggcaatacaccctttacacccacataaaattctgacaggtggcaatctagaccccacataaatagaagata 55966352  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    || |||||||||||||||||||||||||||||||    
T  55966353 aattgtggttgtgagatgaacttaccaaaatatc 55966386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 31681095 - 31680962
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||| || ||||||||||||||||||||||| | | ||| ||||||||||||||| | ||  |  |||||||| ||||||||||||    
T  31681095 agagtggtgatacatgtagcatcccatgtggcaatacaccctttacacctacataaaattctgacacgtggcaatctaaaccccacataaatagaagata 31680996  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  31680995 aagtgtggttgtgagatgaacttaccaaaatatc 31680962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 51512173 - 51512305
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||| ||||||||||| | || ||| ||||||||||||||||||||| | ||  ||||||||||||||||| |||||||    
T  51512173 gagtgatgatacatgtaccaccccacgtggcaatacatctttaatacccacacaaaattctgacacgtggcaacctggaccccacacaaataaaagataa 51512272  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||| | |||||||||||||||||||||    
T  51512273 agtgtggttataagatgaacttaccaaaatatc 51512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 39631275 - 39631161
Alignment:
Q  285 caccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatga 384  Q
    ||||||||||| ||||||| |||||| | |||||||||||||||||||||   | |||| ||||||||||||||||||||||||||||||||||||||||    
T  39631275 caccccatgtgacaatacatcctttacacccacacaaaattctgacacgtgacatattgaaccccacacaaatagaagataaagtgtggttgtgagatga 39631176  T
Q  385 acttaccaaaatatc 399  Q
    |||||||||||||||    
T  39631175 acttaccaaaatatc 39631161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 399
Target Start/End: Original strand, 48463361 - 48463490
Alignment:
Q  270 tggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagt 369  Q
    |||||||||||||||||| | |||||||||||||||||||| | ||||| |||||||||||| || ||||  || |||||||| |||||||| |||||||    
T  48463361 tggtgatacatgtaccactctatgtggcaatacaccctttacacccacataaaattctgacatgtggtaatctgaaccccacataaatagaaaataaagt 48463460  T
Q  370 gtggttgtgagatgaacttaccaaaatatc 399  Q
     |||||||||||||||||||||||||||||    
T  48463461 atggttgtgagatgaacttaccaaaatatc 48463490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 12497142 - 12497016
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||||||| ||||||||||||| ||||||||  |||| | |||||||||||||| |||||| | |||||| ||| ||||||||||||||||||||||||    
T  12497142 tgatacatgcaccaccccatgtgacaatacacgttttacacccacacaaaattctaacacgtggcaaattgaacctcacacaaatagaagataaagtgtg 12497043  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
     |||| |||||||||||||||||||||    
T  12497042 attgtaagatgaacttaccaaaatatc 12497016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 27316619 - 27316753
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaa-ttctgacacgtcgtaaattggaccccacacaaatagaagat 364  Q
    |||||| |||||||| || || |||||||| |||||||||||||| |||||||||||| ||||||||||| | || |||||| ||| | |||||||||||    
T  27316619 agagtgatgatacatttatcatcccatgtgacaatacaccctttacatccacacaaaaattctgacacgtggcaacttggactccaaataaatagaagat 27316718  T
Q  365 aaagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||| |||||||||||||||||||||||    
T  27316719 aaagtgtggttatgagatgaacttaccaaaatatc 27316753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 23204686 - 23204818
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||| |||||| |||||||||||||| | |||||| | ||||| |||||||||||| || | ||  ||||||||||| |||||||||||||    
T  23204686 gagtgatgatacacgtaccatcccatgtggcaatatatcctttacacccacataaaattctgacatgtggcaacctggaccccacataaatagaagataa 23204785  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||| |||||||||| ||||||||    
T  23204786 agtgtggttgtgacatgaacttacaaaaatatc 23204818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 398
Target Start/End: Complemental strand, 21687199 - 21687067
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||| |||||||| || |||||||||||||  ||||| || |||||||||||||||||||| | ||  || || ||| ||||||||||||||    
T  21687199 agagtgatgatatatgtaccaacctatgtggcaatacattctttacattcacacaaaattctgacacgtggcaacctgaactccagacaaatagaagata 21687100  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatat 398  Q
    |||| ||||| |||||||||||||| |||||||    
T  21687099 aagtatggttatgagatgaacttactaaaatat 21687067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 41848158 - 41848034
Alignment:
Q  272 gtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgt 371  Q
    |||||||||||||  |||||||||||||||||||| ||| |||||| ||||||||||||| ||   ||  || ||||||||||||||||||| |||||||    
T  41848158 gtgatacatgtacacccccatgtggcaatacaccccttacatccacgcaaaattctgacatgtgacaatctgaaccccacacaaatagaagagaaagtgt 41848059  T
Q  372 ggttgtgagatgaacttaccaaaat 396  Q
    ||||||| |||||| || |||||||    
T  41848058 ggttgtgcgatgaatttgccaaaat 41848034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 399
Target Start/End: Original strand, 46412389 - 46412509
Alignment:
Q  279 atgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtg 378  Q
    ||||||||||| || || ||||| ||  |||| ||| ||||||||||||||||||| | || ||  |||||||| |||||||||||||||||||||||||    
T  46412389 atgtaccaccctatatgacaatatactttttacatctacacaaaattctgacacgtggcaatttaaaccccacataaatagaagataaagtgtggttgtg 46412488  T
Q  379 agatgaacttaccaaaatatc 399  Q
    ||| |||||||||||||||||    
T  46412489 agaagaacttaccaaaatatc 46412509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 45490225 - 45490353
Alignment:
Q  271 ggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtg 370  Q
    |||||||||||||  |||| ||||||||||| | | |||| | |||||||| |||||||||||| | ||  |||| |||  |||||||||||||||||||    
T  45490225 ggtgatacatgtagtaccctatgtggcaatatatcatttacacccacacaagattctgacacgtggcaacctggatcccgtacaaatagaagataaagtg 45490324  T
Q  371 tggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||| |||| ||| ||||    
T  45490325 tggttgtgagatgaatttactaaagtatc 45490353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 396
Target Start/End: Complemental strand, 28988665 - 28988536
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||  || |||||| |||||||||| |||  || | ||||||||||||||  | | ||  |||||||||||||||||||||| |    
T  28988665 agagtggtgatacatgtacaccctcatgtgacaatacaccccttacctc-atacaaaattctgacatatggcaacctggaccccacacaaatagaagaga 28988567  T
Q  366 aagtgtggttgtgagatgaacttaccaaaat 396  Q
    |||||||||| ||||||||| ||| ||||||    
T  28988566 aagtgtggttatgagatgaatttatcaaaat 28988536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 41878592 - 41878466
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||||     ||  ||||||| ||||| | | |||||||||||||||||||   ||  |||||||||||||||||||||| |    
T  41878592 agagtggtgatacatgtaccacc-----tg--aatacactctttacaccaacacaaaattctgacacgtgacaatctggaccccacacaaatagaagaga 41878500  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    | || ||||||||||||||||||| |||||||||    
T  41878499 aggtttggttgtgagatgaacttatcaaaatatc 41878466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 56215805 - 56215937
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||  | ||||||||| |||||||  ||| | ||||||||||||||||||  | | ||  | |||||||||||||||| ||| |    
T  56215805 agagtggtgatacatgtacaccaccatgtggccatacacctcttacacccacacaaaattctgacatatagcaacctagaccccacacaaatag-agaga 56215903  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||| || || ||||||||||    
T  56215904 aagtgtggttgtgagataaattttccaaaatatc 56215937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 396
Target Start/End: Original strand, 41327478 - 41327580
Alignment:
Q  294 tggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaacttaccaa 393  Q
    ||||||||||||| ||| |  |||| |||||||| ||| || | ||  |||||||||||||||| ||||| ||||||||| ||||||||||| |||||||    
T  41327478 tggcaatacaccccttacactcacaaaaaattctaacatgtggcaacctggaccccacacaaattgaagagaaagtgtggatgtgagatgaatttaccaa 41327577  T
Q  394 aat 396  Q
    |||    
T  41327578 aat 41327580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 19880150 - 19880082
Alignment:
Q  263 ttgagagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  19880150 ttgagagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 19880082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 55272284 - 55272348
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  55272284 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 55272348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 32728550 - 32728511
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacacc 305  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  32728550 agagtggtgatacatgtacacccccatgtggcaatacacc 32728511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 331
Target Start/End: Complemental strand, 35037195 - 35037133
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||| || |||||||||||||||||  ||| | ||||||||||| ||||||    
T  35037195 agtggtgatacatgtac-actccatgtggcaatacacctcttacacccacacaaaatcctgaca 35037133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 17619059 - 17619124
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |||||  ||||||||||||  ||| | ||||||||||| ||||||    
T  17619059 agagtggtgatacatgtacatccccacctggcaatacacctcttacacccacacaaaatcctgaca 17619124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 712148 - 712088
Alignment:
Q  271 ggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||  | |||||||||||||||||  ||| | ||||||||||| ||||||    
T  712148 ggtgatacatgtacacctccatgtggcaatacacctcttacacccacacaaaatcctgaca 712088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 305
Target Start/End: Original strand, 960753 - 960789
Alignment:
Q  269 gtggtgatacatgtaccaccccatgtggcaatacacc 305  Q
    ||||||||||||||||  |||||||||||||||||||    
T  960753 gtggtgatacatgtacacccccatgtggcaatacacc 960789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 48435487 - 48435551
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  ||||||||| ||||||| |  ||| | ||||||||||| ||||||    
T  48435487 gagtggtgatacatgtacacccccatgtgacaatacatctcttacacccacacaaaatcctgaca 48435551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 41334571 - 41334703
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  41334571 gagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaacctggaccccacacaaatagaagataa 41334670  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  41334671 agtgtggttgtgagatgaacttaccaaaatatc 41334703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 2614563 - 2614689
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||    
T  2614563 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 2614662  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  2614663 gttgtgagatgaacttaccaaaatatc 2614689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 292 - 399
Target Start/End: Complemental strand, 22512472 - 22512365
Alignment:
Q  292 tgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaacttacc 391  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512472 tgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagataaagtgtggttgtgagatgaacttacc 22512373  T
Q  392 aaaatatc 399  Q
    ||||||||    
T  22512372 aaaatatc 22512365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 5257188 - 5257055
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| || | ||  | ||||||||| ||||||||||||    
T  5257188 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagata 5257089  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||| |||||||||||||    
T  5257088 aagtgtggttgtgagatgaaattaccaaaatatc 5257055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 18034174 - 18034042
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| | ||| | ||||||||||||||| | ||  |||||||||||||||||||||||||    
T  18034174 gagtgatgatacatgtaccaccccatatggcaatacaccctttacacccatataaaattctgacacgtggcaacctggaccccacacaaatagaagataa 18034075  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  18034074 agtgtggttgtgagatgaacttacaaaaatatc 18034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 33801662 - 33801529
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||| |||||||  ||||||||||||||||| ||||| | ||||||||||||||||||||| | || ||||| |||||||||||||||||||    
T  33801662 agagtgatgatatatgtaccttcccatgtggcaatacactctttacacccacacaaaattctgacacgtggcaacttggatcccacacaaatagaagata 33801563  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||| ||||||||    
T  33801562 aagtgtggttgtgagatgaacttactaaaatatc 33801529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 7617326 - 7617193
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||| | | |||||||||||||||| ||   || || || |||||| ||||||||||||    
T  7617326 agagtgatgatacatgtatcaccccatgtggcaatacaccttttacaccaacacaaaattctgacatgtgacaacttagatcccacataaatagaagata 7617227  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  7617226 aagtgtggttgtgagatgaacttaccaaaatatc 7617193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 38470765 - 38470639
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||| ||||||||||||||||| | ||||| |||||||||| |||| ||||  ||||||||||| |||||||||||||||||||    
T  38470765 tgatacatgtaccacctcatatggcaatacaccctttacacccacataaaattctgatacgtggtaatctggaccccacataaatagaagataaagtgtg 38470666  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
     |||||| ||||| |||||||||||||    
T  38470665 attgtgaaatgaatttaccaaaatatc 38470639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 25914903 - 25915002
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  25914903 agagtgatgatacatgtaccacctcatgtggcaatacaccatttacacccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 25915002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 372
Target Start/End: Original strand, 39122263 - 39122369
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||||||||||| ||||| | | |||| |||||||||| ||||||||| || | ||  |  |||||||||||||||||||||    
T  39122263 agagtggtgatacatgtaccaccccatgtgacaatatatcatttacatccacacaagattctgacatgtggcaacctaaaccccacacaaatagaagata 39122362  T
Q  366 aagtgtg 372  Q
    |||||||    
T  39122363 aagtgtg 39122369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 39122381 - 39122472
Alignment:
Q  307 tttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaacttaccaaaatat 398  Q
    |||| |||||||||| ||||||||| || | ||  |  ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  39122381 tttacatccacacaagattctgacatgtggcaacctaaaccccacacaaatagaagataaagtgtagttgtgagatgaatttaccaaaatat 39122472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 30622627 - 30622691
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  |||||||||||||||||||  ||| | |||||||||||| |||||    
T  30622627 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaattttgaca 30622691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 32473303 - 32473366
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||  | |||||||||||||||||  ||| | ||||||||||||||||||    
T  32473303 agtggtgatacatgtacacctccatgtggcaatacacctcttacacccacacaaaattctgaca 32473366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 21280122 - 21279989
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  21280122 agagtgatgatacatgtaccaccccatgtggcaatataccctttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaagata 21280023  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||| |||||||||||||    
T  21280022 aagtgtggttgtgagatgaatttaccaaaatatc 21279989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 24203895 - 24204027
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | || ||||||||||||||||||||| ||||    
T  24203895 gagtgatgatacatgtaccactccatgtgacaatacaccctttacatccacacaaaattctgacacgtggcaacttggaccccacacaaatagaatataa 24203994  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  24203995 agtgtggttgtgagatgaacttaccaaaatatc 24204027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 268 - 398
Target Start/End: Complemental strand, 30014534 - 30014404
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||    
T  30014534 agtgatgatacatgtatcaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggtaacttggaccccatataaatagaagataaa 30014435  T
Q  368 gtgtggttgtgagatgaacttaccaaaatat 398  Q
    || ||||||||||||||||||||||||||||    
T  30014434 gtatggttgtgagatgaacttaccaaaatat 30014404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 7292935 - 7292807
Alignment:
Q  271 ggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtg 370  Q
    |||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||| | ||  |||||||||||||||||||||||||||||    
T  7292935 ggtgatacatgtaccaccccatgtggcaatacaccctttacacacaaacaaaattctgacacgtggcaacctggaccccacacaaatagaagataaagtg 7292836  T
Q  371 tggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||    
T  7292835 tggttgtgagatgaacttaccaaaatatc 7292807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 30736174 - 30736042
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||  ||||||||||| |||||||||||||    
T  30736174 gagtgatgatacatgtaccatcccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 30736075  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| ||||||||||||||||||||||||||    
T  30736074 agtgtgattgtgagatgaacttaccaaaatatc 30736042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 9698247 - 9698373
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||    
T  9698247 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 9698346  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  9698347 gttgtgagatgaacttaccaaaatatc 9698373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 26669916 - 26670049
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | ||  ||||| ||||||||||||||||||    
T  26669916 agagcggtgatatatgtaccacctcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 26670015  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  26670016 aagtgtggttgtgagatgaacttaccaaaatatc 26670049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 13743130 - 13743261
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||||||||||||||||||||| ||||||||||| | |||||| | |||||||| |||||||||||| | ||  ||||||||||||||||||||||||||    
T  13743130 agtggtgatacatgtaccaccctatgtggcaatatatcctttacacccacacaagattctgacacgtggcaacctggaccccacacaaatagaagataaa 13743229  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||    
T  13743230 gtgtggttgtgagatgaacttaccaaaatatc 13743261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 13748630 - 13748761
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||||||||||||||||||||| ||||||||||| | |||||| | |||||||| |||||||||||| | ||  ||||||||||||||||||||||||||    
T  13748630 agtggtgatacatgtaccaccctatgtggcaatatatcctttacacccacacaagattctgacacgtggcaacctggaccccacacaaatagaagataaa 13748729  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||    
T  13748730 gtgtggttgtgagatgaacttaccaaaatatc 13748761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 7367735 - 7367609
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||  |||| |||||| |||||||| ||||||||||    
T  7367735 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggatcccacataaatagaaaataaagtgtg 7367636  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  7367635 gttgtgagatgaacttaccaaaatatc 7367609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 3213593 - 3213460
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  3213593 agagtggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggaccccacataaatagaagata 3213494  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||| ||||||||| ||||| |||||||||||||    
T  3213493 aagtatggttgtgaaatgaatttaccaaaatatc 3213460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 7273242 - 7273375
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||| ||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| | || |||||||||||| ||||||||||||    
T  7273242 agagtgatgatgcatgtaccaccccatgtggtaatacactctttacacccacacaaaattctgacacgtggcaacttggaccccacataaatagaagata 7273341  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||| ||||||||||||||||||||||||||    
T  7273342 aagtgtgattgtgagatgaacttaccaaaatatc 7273375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 21293584 - 21293717
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  21293584 agagtggtgatacatgtaccacctcatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggaccccacataaatagaagata 21293683  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||| ||||| |||||||||||||    
T  21293684 aagtgtggttgtgaaatgaatttaccaaaatatc 21293717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 397
Target Start/End: Complemental strand, 26466992 - 26466861
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||| |||||||| ||||||||||||||| |||| | ||| ||||||| |||| |||| | ||  || |||||| ||||||||||||||    
T  26466992 agagtgatgatacatttaccaccctatgtggcaatacaccttttacacccatacaaaatcctgatacgtggcaacctgaaccccaaacaaatagaagata 26466893  T
Q  366 aagtgtggttgtgagatgaacttaccaaaata 397  Q
    ||||||||||||||||||||||||||||||||    
T  26466892 aagtgtggttgtgagatgaacttaccaaaata 26466861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 33254107 - 33254049
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaat 324  Q
    |||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||    
T  33254107 agagtggtgatacatgtacacctccatgtggcaatacaccttttatacccacacaaaat 33254049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 33242595 - 33242531
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  33242595 gagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 33242531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 27441735 - 27441670
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||   ||||||||||||||||||  ||| | ||||| ||||| ||||||    
T  27441735 agagtggtgatacatgtacacacccatgtggcaatacacctcttacacccacataaaatcctgaca 27441670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 42197344 - 42197475
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| | ||  ||||||||||||||||||||||||||    
T  42197344 agtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattttgacacgtggcaatctggaccccacacaaatagaagataaa 42197443  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||    
T  42197444 gtgtggttgtgagatgaacttaccaaaatatc 42197475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 29705548 - 29705422
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||    
T  29705548 tgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccgcacaaatagaagataaagtgtg 29705449  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||| |||||||||    
T  29705448 gttgtgagatgaacttatcaaaatatc 29705422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 36743390 - 36743523
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  36743390 agagtgatgatacatgtaccaccccatgtggcaatacaccatttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagata 36743489  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  36743490 aagtgtggttgtgagatgaacttaccaaaatatc 36743523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 2547188 - 2547056
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | || ||||| ||||||||||||||||||||    
T  2547188 gagtgatgatacatgtaccaccctatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggatcccacacaaatagaagataa 2547089  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  2547088 agtgtggttgtgagatgaacttactaaaatatc 2547056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 31384856 - 31384725
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| | ||  |||||||||||||||||||||||||    
T  31384856 gagtgatgatatatgtaccaccccatgtggcaatataccctttacatccacataaaattctgacacgtagcaacctggaccccacacaaatagaagataa 31384757  T
Q  367 agtgtggttgtgagatgaacttaccaaaatat 398  Q
    ||||||||||||||||||||||||||||||||    
T  31384756 agtgtggttgtgagatgaacttaccaaaatat 31384725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 11582952 - 11582826
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||    
T  11582952 tgatacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacacaaatagaagataaagtgtg 11582853  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||    
T  11582852 gttgtgagatgaacttaccaaaatatc 11582826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 20148953 - 20148820
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||||||||| | ||  |||| |||||| ||||||| ||||    
T  20148953 agagtggtgatacatgtaccacaccatgtggcaatacaccctttacacccacataaaattctgacacgtggcaatctggatcccacataaatagatgata 20148854  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  20148853 aagtgtggttgtgagatgaacttaccaaaatatc 20148820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 30660649 - 30660782
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||| || || |||||||||||||||||||| ||||||| ||||||||||||||| | ||  ||||||||||||||||||||||||    
T  30660649 agagtgatgatacatgtatcatcctatgtggcaatacaccctttacatccacataaaattctgacacgtggcaacctggaccccacacaaatagaagata 30660748  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||| |||||||||||||||||||||    
T  30660749 aagtgtggttgtaagatgaacttaccaaaatatc 30660782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 9241744 - 9241612
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||| | ||  ||||||||||| |||||||||||||    
T  9241744 gagtgatgatacatgtaccaccccatgtggcaacacaccctttgcacccacacaaaattctgacacgtggcaacctggaccccacataaatagaagataa 9241645  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  9241644 agtgtggttgtgagatgaacttacaaaaatatc 9241612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 271 - 399
Target Start/End: Original strand, 29800862 - 29800990
Alignment:
Q  271 ggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtg 370  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| || | ||  | ||||||||| |||||||||||||||||    
T  29800862 ggtgatacatgtaccaccccatgtggcaatacaccctttacacccacataaaattctgacatgtggcaatcttgaccccacataaatagaagataaagtg 29800961  T
Q  371 tggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||    
T  29800962 tggttgtgagatgaacttaccaaaatatc 29800990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 266 - 397
Target Start/End: Original strand, 30912469 - 30912600
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| | ||  | ||||||||||||||||||||||    
T  30912469 agagtgatgatacatgtaccaccccatgtggcaatacactctttacacccacacaaaattctgacacgtggcaacctagaccccacacaaatagaagata 30912568  T
Q  366 aagtgtggttgtgagatgaacttaccaaaata 397  Q
    | ||| ||||||||||||||||||||||||||    
T  30912569 aggtgcggttgtgagatgaacttaccaaaata 30912600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 2165877 - 2166003
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    |||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| | ||  || ||||||||||||||||||||||||||||    
T  2165877 tgatacatgtaccatcccatgtgacaatacaccctttacacccacacaaaattctgacacgtggcaacctgaaccccacacaaatagaagataaagtgtg 2165976  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    ||| |||||||||||||||||||||||    
T  2165977 gttatgagatgaacttaccaaaatatc 2166003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 26125825 - 26125695
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||||||||| |||||||||||||||||||||||||||||||| | || || ||||||||||||||| | ||  ||||||| ||| ||||||||||||||    
T  26125825 agtggtgatatatgtaccaccccatgtggcaatacaccctttacacccgcataaaattctgacacgtggcaatctggaccc-acataaatagaagataaa 26125727  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||    
T  26125726 gtgtggttgtgagatgaacttaccaaaatatc 26125695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 45397508 - 45397376
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||| | ||  |||| |||||||||||||||||||    
T  45397508 agagtgatgatacatgtaccaccc-atgtggcaacacaccctttacacccacacaaaattctgacacgtggcaatctggagcccacacaaatagaagata 45397410  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    || |||||||||||||||||||||| ||||||||    
T  45397409 aattgtggttgtgagatgaacttacaaaaatatc 45397376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 42295386 - 42295255
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||| |||||||| || ||||||||||| |||||||| |||||||||||||||||||| || | || |||||||| ||| |||||||||||||    
T  42295386 gagtgatgataaatgtaccatcctatgtggcaatataccctttacatccacacaaaattctgacatgtggcaacttggaccc-acataaatagaagataa 42295288  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  42295287 agtgtggttgtgagatgaacttaccaaaatatc 42295255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 267 - 398
Target Start/End: Complemental strand, 3743963 - 3743832
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||| | ||  || |||| ||| |||||||||||||    
T  3743963 gagtgatgatatatgtaccaccccatgtagcaatacaccctttacacccacataaaattctgacacgtggcaatctgaaccctacataaatagaagataa 3743864  T
Q  367 agtgtggttgtgagatgaacttaccaaaatat 398  Q
    ||||||||||||||||||||||| ||||||||    
T  3743863 agtgtggttgtgagatgaacttatcaaaatat 3743832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 290 - 399
Target Start/End: Complemental strand, 5755072 - 5754963
Alignment:
Q  290 catgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaactta 389  Q
    |||| |||||||||||||||| | |||||||||||||| |||||| | || ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  5755072 catggggcaatacaccctttacacccacacaaaattctaacacgtggcaacttggatcccacataaatagaagataaagtgtggttgtgagatgaactta 5754973  T
Q  390 ccaaaatatc 399  Q
    ||||||||||    
T  5754972 ccaaaatatc 5754963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 1375735 - 1375602
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||||||||||||||||||||| ||||| |||||||  ||||| | |||||||| ||||| |||||| | ||  || || ||||||||||||||||||    
T  1375735 agagtggtgatacatgtaccaccctatgtgacaatacattctttacacccacacaagattctaacacgtggcaatctgaactccacacaaatagaagata 1375636  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| |||||||||| || |||||||||||||    
T  1375635 aagtgtagttgtgagataaatttaccaaaatatc 1375602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 396
Target Start/End: Original strand, 40528542 - 40528671
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    |||||||||||||||| |  || |||||| ||||| | | |||| |||||||||||||| ||||| ||   || ||| ||||||||||||||||||| ||    
T  40528542 gagtggtgatacatgtgcaccctcatgtgacaatatatcatttacatccacacaaaattatgacatgtgacaacttgaaccccacacaaatagaagagaa 40528641  T
Q  367 agtgtggttgtgagatgaacttaccaaaat 396  Q
    |||||||||||||||| || ||| ||||||    
T  40528642 agtgtggttgtgagataaatttatcaaaat 40528671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 34304980 - 34304916
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||| | ||| ||||||| ||||||    
T  34304980 agagtggtgatacatgtac-accccatgtggcaatacacctcttacacccaaacaaaatcctgaca 34304916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 10678060 - 10678124
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  ||||||||||||||||| |  ||| | ||||||||||| ||||||    
T  10678060 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccacacaaaatcctgaca 10678124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 42699353 - 42699317
Alignment:
Q  363 ataaagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||| ||||||||    
T  42699353 ataaagtgtggttgtgagatgaacttacaaaaatatc 42699317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 35181709 - 35181644
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |  ||||||||||||||||  ||| | ||||||||||| ||||||    
T  35181709 agagtggtgatacatgtacaccttcatgtggcaatacacctcttacacccacacaaaatcctgaca 35181644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 33629901 - 33629965
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||| ||||||  |||||||||||||||||||  ||| | | |||||||||| |||||    
T  33629901 gagtggtgatatatgtacacccccatgtggcaatacacctcttacacctacacaaaattttgaca 33629965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 112848 - 112715
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| | ||  ||||||||||||||||||||||||    
T  112848 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 112749  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  112748 aagtgtggttgtgagatgaacttaccaaaatatc 112715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 19047350 - 19047217
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||| | ||  ||||||||||||||||||||||||    
T  19047350 agagtgatgatacatgtaccaccccatgtggcaatacaccctttacacccatacaaaattttgacacgtggcaatctggaccccacacaaatagaagata 19047251  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  19047250 aagtgtggttgtgagatgaacttaccaaaatatc 19047217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 30838825 - 30838692
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  30838825 agagtgatgatacatgtaccaccccatgtggcaatacaccttttacacctacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 30838726  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  30838725 aagtgtggttgtgagatgaacttaccaaaatatc 30838692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 4764633 - 4764765
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| | ||  ||||||||||||||||||||||||    
T  4764633 agagtgatgatacatgtaccacctcatgtggcaatacaccttttacatccacacaaaattctgacacgtggcaacctggaccccacacaaatagaagata 4764732  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatat 398  Q
    |||||||||||||||||||| ||||||||||||    
T  4764733 aagtgtggttgtgagatgaatttaccaaaatat 4764765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 42849768 - 42849898
Alignment:
Q  268 agtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaa 367  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||||||| |||||    
T  42849768 agtgatgatacatgtaccaccccatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttggaccccacacaaatagaa-ataaa 42849866  T
Q  368 gtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||| |||||||||    
T  42849867 gtgtggttgtgagatgaacttatcaaaatatc 42849898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 12302167 - 12302293
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||  ||||||||||| |||||||||||||||||||    
T  12302167 tgatacatgtatcaccccatgtggcaatacatcctttacatccacacaaaattctgacacatggtaacctggaccccacataaatagaagataaagtgtg 12302266  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||| ||||||||    
T  12302267 gttgtgagatgaacttacaaaaatatc 12302293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 43335671 - 43335803
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| | ||  |||| |||||| |||||||||||||    
T  43335671 gagtgatgatacatgtaccaccccatgtggcaatataccttttacatccacacaaaattctgacacgtggcaacctggatcccacataaatagaagataa 43335770  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||| |||||||||||||||||||||||||||    
T  43335771 agtgtagttgtgagatgaacttaccaaaatatc 43335803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 43490308 - 43490441
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| || ||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||| | ||  ||||||||||| ||||||||||||    
T  43490308 agagtgatgctacatgtaccacctcatgtggcaatacaccctttacacccatacaaaattctgacacgtggcaatctggaccccacataaatagaagata 43490407  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||| |||||||||||||||||||||||    
T  43490408 aagtgtggttatgagatgaacttaccaaaatatc 43490441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 1750606 - 1750474
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||  |||||||||||||||||||| |||||||||| |  |||||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  1750606 gagtgatgatatttgtaccaccccatgtggcaacacaccctttacactcacacaaaattctgacacgtggcaatctggaccccacacaaatagaagataa 1750507  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  1750506 agtgtggttgtgagatgaacttacaaaaatatc 1750474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 16096940 - 16096807
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattgga-ccccacacaaatagaagata 365  Q
    ||||| |||||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||||| | || || || ||||||| || |||||||||    
T  16096940 gagtgatgatacatgtaccacatcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacttagacccccacataagtagaagata 16096841  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||| |||| |||||||||||    
T  16096840 aagtgtggttgtgagattaactcaccaaaatatc 16096807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 39149201 - 39149332
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||||||| |||||| |||||||| |||| | |||||||||||| ||| |||| |||| || ||||| ||||||||| ||||||    
T  39149201 agagtgatgatacatgtaccaccc-atgtggtaatacaccttttacacccacacaaaattatgagacgtggtaatttagaccc-acacaaataaaagata 39149298  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||| |||||| ||||||||||||||||||||    
T  39149299 aagtgtagttgtgggatgaacttaccaaaatatc 39149332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 396
Target Start/End: Original strand, 34817683 - 34817813
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||||| ||||||||||||  |||||||||||||| | ||| ||| | ||| |||||||||||||| || | ||  |||| |||  |||||||||||| |    
T  34817683 agagtgatgatacatgtacacccccatgtggcaatgctccccttacacccatacaaaattctgacatgtggcaacctggatcccgtacaaatagaagaga 34817782  T
Q  366 aagtgtggttgtgagatgaacttaccaaaat 396  Q
    |||||||||||||||||||| ||||||||||    
T  34817783 aagtgtggttgtgagatgaatttaccaaaat 34817813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 399
Target Start/End: Complemental strand, 42026955 - 42026829
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||||||||||  | |||||||||||||||||| ||| | ||||||||||||||||||  | | ||  | |||||||||||||||||| | |||||||     
T  42026955 tgatacatgtacacctccatgtggcaatacaccccttacacccacacaaaattctgacatcttgcaacctagaccccacacaaatagaaaagaaagtgta 42026856  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||| || ||||||||||    
T  42026855 gttgtgagatgaatttgccaaaatatc 42026829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 13780676 - 13780775
Alignment:
Q  300 tacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||| | | | |||||||||||||| || | ||  ||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||    
T  13780676 tacaccctttacacctatacaaaattctgacatgtggcaacctggaccccacataaatagaagagaaagtgtggttgtgagatgaatttatcaaaatatc 13780775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 12415368 - 12415432
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||   ||||||||||||||||||  ||| ||||||||||||||||||||    
T  12415368 gagtggtgatacatgtacactcccatgtggcaatacacctcttacatccacacaaaattctgaca 12415432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 12427428 - 12427492
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||   ||||||||||||||||||  ||| ||||||||||||||||||||    
T  12427428 gagtggtgatacatgtacactcccatgtggcaatacacctcttacatccacacaaaattctgaca 12427492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 34895648 - 34895713
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  34895648 agagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaatcctgaca 34895713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 8896542 - 8896622
Alignment:
Q  318 acaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtggttgtgagatgaacttaccaaaatat 398  Q
    |||||||||||||| || | ||  || ||| ||||||||||||| | |||||||| |||||||||||| ||||||||||||    
T  8896542 acaaaattctgacatgtggcaacctgaacctcacacaaatagaaaagaaagtgtgattgtgagatgaatttaccaaaatat 8896622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 11825562 - 11825626
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  |||||||||||||||||||  ||| | ||||||||||| ||||||    
T  11825562 gagtggtgatacatgtacatccccatgtggcaatacacctcttacacccacacaaaatcctgaca 11825626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 18491898 - 18491840
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaat 324  Q
    |||||||||||||||||||  |||||||||||||||||||  ||| | |||||||||||    
T  18491898 agagtggtgatacatgtacacccccatgtggcaatacacctcttacacccacacaaaat 18491840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 6518401 - 6518466
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  | ||||||| ||||||||| |||| | ||||||||||| ||||||    
T  6518401 agagtggtgatacatgtacacctccatgtgtcaatacaccttttacacccacacaaaatcctgaca 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 41281881 - 41281946
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||  |||||| ||||||||||||  ||| | ||||||||||| ||||||    
T  41281881 agagtggtgatacatgtacacccccatatggcaatacacctcttacacccacacaaaatcctgaca 41281946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 966742 - 966806
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  |||||||||| ||||||||  ||| | ||||||||||| ||||||    
T  966742 gagtggtgatacatgtacatccccatgtggaaatacacctcttacacccacacaaaatcctgaca 966806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 43114749 - 43114685
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  || ||||||||||||||||  ||| | ||||||||||| ||||||    
T  43114749 gagtggtgatacatgtacaccctcatgtggcaatacacctcttacacccacacaaaatcctgaca 43114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 16804160 - 16804096
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  ||| || || |||||||||  ||| | ||||||||||||||||||    
T  16804160 gagtggtgatacatgtacacccctatatgacaatacacctcttacacccacacaaaattctgaca 16804096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 16843442 - 16843378
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    ||||||||||||||||||  ||| || || |||||||||  ||| | ||||||||||||||||||    
T  16843442 gagtggtgatacatgtacacccctatatgacaatacacctcttacacccacacaaaattctgaca 16843378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 19930894 - 19930830
Alignment:
Q  293 gtggcaatacacccttt-atatccacacaaaattctgacacgtcgtaaattggaccccacacaaa 356  Q
    ||||||||||||||||| | |||||||||||| |||||||||| || |  |||||||| ||||||    
T  19930894 gtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaa 19930830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 27864728 - 27864772
Alignment:
Q  291 atgtggcaatacacccttt-atatccacacaaaattctgacacgt 334  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||    
T  27864728 atgtggcaatacaccctttgacatccacacaaaaatctgacacgt 27864772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 14097 - 14228
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||  |||| ||||||||||||||||||||    
T  14097 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgga-cccacacaaatagaagataa 14195  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  14196 agtgtggttgtgagatgaacttacaaaaatatc 14228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 24425 - 24556
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||  |||| ||||||||||||||||||||    
T  24425 gagtgatgatacatgtaccaccccatgtggcaatacaccctttacatccacacaaaattctgacacgtggcaacctgga-cccacacaaatagaagataa 24523  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||| ||||||||    
T  24524 agtgtggttgtgagatgaacttacaaaaatatc 24556  T

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Target: scaffold0119 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 878 - 745
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagata 365  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| | ||  ||||| ||||||||||||||||||    
T  878 agagcggtgatatatgtaccacctcatgtggcaatacaccctttacacccacacaaaattctgacacgtggcaacctggactccacacaaatagaagata 779  T
Q  366 aagtgtggttgtgagatgaacttaccaaaatatc 399  Q
    ||||||||||||||||||||||||||||||||||    
T  778 aagtgtggttgtgagatgaacttaccaaaatatc 745  T

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Target: scaffold0385 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 11443 - 11311
Alignment:
Q  267 gagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataa 366  Q
    ||||| |||||||||||||| |||||||||||||||||  |||| | | ||||||||||||||||||| | || ||||||||||||  ||||||||||||    
T  11443 gagtgatgatacatgtaccatcccatgtggcaatacactatttacacctacacaaaattctgacacgtagcaacttggaccccacatcaatagaagataa 11344  T
Q  367 agtgtggttgtgagatgaacttaccaaaatatc 399  Q
    |||||||||||||||||||||||||||||||||    
T  11343 agtgtggttgtgagatgaacttaccaaaatatc 11311  T

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Target: scaffold0157 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 399
Target Start/End: Original strand, 23335 - 23461
Alignment:
Q  273 tgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgacacgtcgtaaattggaccccacacaaatagaagataaagtgtg 372  Q
    ||||||||| ||||||||||||| ||||||||  |||| | |||||||||||||| |||||| | |||||| ||| ||||||||||||||||||||||||    
T  23335 tgatacatgcaccaccccatgtgacaatacacgttttacacccacacaaaattctaacacgtggcaaattgaacctcacacaaatagaagataaagtgtg 23434  T
Q  373 gttgtgagatgaacttaccaaaatatc 399  Q
     |||| |||||||||||||||||||||    
T  23435 attgtaagatgaacttaccaaaatatc 23461  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 45626 - 45691
Alignment:
Q  266 agagtggtgatacatgtaccaccccatgtggcaatacaccctttatatccacacaaaattctgaca 331  Q
    |||||||||||||||||||   ||||||||||||||||||  ||| | ||||| ||||| ||||||    
T  45626 agagtggtgatacatgtacacacccatgtggcaatacacctcttacacccacataaaatcctgaca 45691  T

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