View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_22 (Length: 399)
Name: NF21239_low_22
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 43704997 - 43704618
Alignment:
| Q |
1 |
cagattttattactactgtgaattaacggagtgcagttgtgcttaagtgcactgtaatatgtttttaactttaaagaatctcactgaaaaactcacacaa |
100 |
Q |
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| T |
43704997 |
cagattttattactactgtgaattaacggagtgcagttgtgcttaagtgcactgtaatatgtttttaactttaaagaatctcactgaaaaactcacacaa |
43704898 |
T |
|
| Q |
101 |
agataagtaccgagaagtgtataattgtatgtaccacaacatattaaatatcgatgtagaccnnnnnnnnnnaccttctaagctatatttacgagacaag |
200 |
Q |
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| T |
43704897 |
agataagtaccgagaagtgtataattgtatgtaccacgacatattaaatatcgatgtagaccttttttttttaccttctaagctatatttacgagacaag |
43704798 |
T |
|
| Q |
201 |
tgagctttaacaatcacactttgcacgtatttgnnnnnnncagtagtatataattgtatgacaaaagtataatatgcccccaaattatatctcacaagta |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43704797 |
tgagctttaacaatcacactttgcacgtatttgaaaaaaacagtagtatataattgtatgacaaaagtataatatgcccccaaattatatctcacaagta |
43704698 |
T |
|
| Q |
301 |
tcttctaccttacagtttcaatagagcagtgtggcaattgggggcgtatatgaaaatatatggactattatttttctcat |
380 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43704697 |
tcttctaccttaccgtttcaatagagcagtgtggcaattgggggcgtatatgaaaatatatagactattatttttctcat |
43704618 |
T |
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