View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_23 (Length: 358)
Name: NF21239_low_23
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 40775749 - 40776041
Alignment:
| Q |
12 |
aatactcacaagtttagacatatttcacataactcataagtgtatttaaatatgtaatatgacatgttttttactgactaaaacctaaatatatatcatt |
111 |
Q |
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| T |
40775749 |
aatactcacaagtttagatatatttcacataactcataa----------atatgtaatatgacatgttttttacggactaaaacctaaatatatatcatt |
40775838 |
T |
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| Q |
112 |
gcgccaaaagttacatcaaaatcatttacaaattagaatgttgaataaaagaaaaagaaaattcaatcacacctaagttgaaaggaactgaatgagctcg |
211 |
Q |
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| T |
40775839 |
gcgccaaaagttacatcagaatcatttacaaattagaatgttgaat------aaaagaaaattcaatcacacctaagttgaaaggaactgaatgagctcg |
40775932 |
T |
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| Q |
212 |
atgtacaatattctcacatacgatccgtggagttgaatgagcaac-nnnnnnnnnnnntgagacgtgaagttggtaaaatgaaacttttttgataagagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40775933 |
atgtacaatattctcacatacgatccgtggagttgaatgagcaacaaaaaaaaataaatgagacgtgaagttggtaaaatgaaacttttttgttaagagt |
40776032 |
T |
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