View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_25 (Length: 347)
Name: NF21239_low_25
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 14066136 - 14065816
Alignment:
| Q |
17 |
cagaaacaattagaaataagagtttgagattgttcacatttcatatagtgaaatttgttgtttcctatagacatagtccaaattgggtgaaccaccttat |
116 |
Q |
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| T |
14066136 |
cagaaacaattagaaataagagtttgagattgttcacatttcatatagtgaaatttgttgtttcctatagacatagtccaaattgggtgaaccaccttat |
14066037 |
T |
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| Q |
117 |
tttgatgtgtcttgataagctgtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagtatcagttagtta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
14066036 |
tttgatgtgtcttgataagctgtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagttttagttagtta |
14065937 |
T |
|
| Q |
217 |
tgaatttcccgcatttctagcttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14065936 |
tgaatttcccgcatttctagcttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatc |
14065837 |
T |
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| Q |
317 |
agattgctcgttcatctcact |
337 |
Q |
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||||||||| ||||| ||||| |
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| T |
14065836 |
agattgctcattcatatcact |
14065816 |
T |
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