View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_26 (Length: 342)

Name: NF21239_low_26
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_26
NF21239_low_26
[»] chr2 (8 HSPs)
chr2 (11-325)||(8413765-8414080)
chr2 (183-260)||(8435701-8435778)
chr2 (59-179)||(14296254-14296374)
chr2 (59-174)||(18693110-18693225)
chr2 (63-179)||(31092320-31092436)
chr2 (62-179)||(18811704-18811821)
chr2 (202-261)||(8377756-8377815)
chr2 (60-179)||(37344623-37344742)
[»] chr3 (5 HSPs)
chr3 (11-180)||(16893080-16893249)
chr3 (98-174)||(35526596-35526672)
chr3 (63-174)||(29346807-29346918)
chr3 (89-179)||(51524871-51524961)
chr3 (83-180)||(31067178-31067276)
[»] chr1 (11 HSPs)
chr1 (59-179)||(49491876-49491995)
chr1 (61-179)||(50903480-50903598)
chr1 (63-180)||(13061962-13062079)
chr1 (62-180)||(3374306-3374424)
chr1 (89-159)||(34566273-34566343)
chr1 (62-180)||(41035024-41035142)
chr1 (90-179)||(17114741-17114830)
chr1 (92-180)||(19394156-19394244)
chr1 (92-158)||(39332359-39332425)
chr1 (15-57)||(49491732-49491774)
chr1 (14-55)||(50903328-50903369)
[»] chr7 (2 HSPs)
chr7 (59-179)||(26449532-26449652)
chr7 (90-174)||(19407870-19407954)
[»] chr4 (5 HSPs)
chr4 (59-174)||(24239839-24239954)
chr4 (60-172)||(16832137-16832249)
chr4 (90-180)||(37050003-37050094)
chr4 (60-133)||(18522296-18522369)
chr4 (60-180)||(16593766-16593886)
[»] chr6 (4 HSPs)
chr6 (59-174)||(4263365-4263480)
chr6 (59-179)||(25167847-25167967)
chr6 (88-179)||(10990028-10990119)
chr6 (59-179)||(3949338-3949458)
[»] scaffold0531 (1 HSPs)
scaffold0531 (60-180)||(10262-10382)
[»] chr8 (4 HSPs)
chr8 (60-174)||(8831219-8831333)
chr8 (58-179)||(27786782-27786903)
chr8 (63-179)||(29369107-29369223)
chr8 (65-179)||(36206422-36206536)
[»] chr5 (5 HSPs)
chr5 (58-179)||(36868296-36868417)
chr5 (63-174)||(19215391-19215502)
chr5 (59-139)||(36150641-36150721)
chr5 (59-179)||(788271-788391)
chr5 (59-151)||(32278702-32278794)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 8413765 - 8414080
Alignment:
Q  11 cagagaaatggcagaagctactagcttaacacccaggttcacaaagatttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaa 110  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  8413765 cagagaaatggcagaagctactagcttaacaaccatgttcacaaagatttgaaccaactattcagtatatggcaggacagctttggaggtacccttttga 8413864  T
Q  111 gcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttttcacaatggaaacaagcatgtcaacctaaaa 210  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8413865 gcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttttgcaatggaaacaagcatgtcaacctaaaa 8413964  T
Q  211 agtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattca-aactgttgtcaattaaaaaactatcaactcacttgggttgatagttac 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  8413965 agtgcaaagaggataccaacctaaatttaaagcaatccactttcaaattcagaactgttgtcaaataaaaaactatcaactcacttgggttgatagttac 8414064  T
Q  310 atgagatgattcaagt 325  Q
    ||||||||||||||||    
T  8414065 atgagatgattcaagt 8414080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 8435701 - 8435778
Alignment:
Q  183 caatggaaacaagcatgtcaacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8435701 caatggaaacaagcatgtcaacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattc 8435778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 14296254 - 14296374
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||  |||| || |||| || ||||||||||| ||||||   |||| || ||||||||||||||||| |||||||||||||||| ||||    
T  14296254 ttgaaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttg 14296353  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    |||  ||||||||||| ||||    
T  14296354 ttcatctgcttcttcttcttt 14296374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 18693225 - 18693110
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||  |||| || ||||||| ||||||||| | ||||||| |||| |||||||||||||||| |||| ||||||| || ||||||||||    
T  18693225 ttgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttg 18693126  T
Q  159 ttcgcctgcttcttct 174  Q
    || ||  |||||||||    
T  18693125 tttgcacgcttcttct 18693110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 31092436 - 31092320
Alignment:
Q  63 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 162  Q
    ||||||||||| |||| |||||||||  ||||||||||| ||||||  ||||| |||||||||||||||||||| || |||| |||| ||||||| |||     
T  31092436 accaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattca 31092337  T
Q  163 cctgcttcttctgcttt 179  Q
    | || ||||||| ||||    
T  31092336 cgtgattcttcttcttt 31092320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 179
Target Start/End: Original strand, 18811704 - 18811821
Alignment:
Q  62 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 161  Q
    |||||||||||| |||| || ||||  |||||||||||   ||||||  |||||||||||||||||||||||||| ||||||  | |||||||||| | |    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgc 18811803  T
Q  162 gcctgcttcttctgcttt 179  Q
     |||||||||||| ||||    
T  18811804 acctgcttcttcttcttt 18811821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 8377815 - 8377756
Alignment:
Q  202 aacctaaaaagtgcaaagaggataccaacctaaatttaaagcaatccactatcaaattca 261  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  8377815 aacctaaaaagtccaaagaggatatcaacctaaatttaaaccaatccaccatcaaattca 8377756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 37344742 - 37344623
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    |||| ||||||||  ||||||| |||| | ||||||||| || ||||||  |||||  ||||||||||||||||||| || |||| | | ||||||||||    
T  37344742 tgaatcaactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgt 37344643  T
Q  160 tcgcctgcttcttctgcttt 179  Q
    || |||| ||||||| ||||    
T  37344642 tcacctgtttcttcttcttt 37344623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 16893249 - 16893080
Alignment:
Q  11 cagagaaatggcagaagctactagcttaacacccaggttcacaaagatttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| | |||||| |    
T  16893249 cagagaaatggcagaagctactagcttaacacccaggttcacagagatttgaaccaactattcggtatatggcaaggcagctttggaggcacccttttga 16893150  T
Q  111 gcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  16893149 gcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgctttt 16893080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 35526596 - 35526672
Alignment:
Q  98 ggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttct 174  Q
    |||| ||||||  |||||||||||||||||||| ||||| ||||||| |||| ||||||||||| ||||||||||||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttct 35526672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 29346918 - 29346807
Alignment:
Q  63 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 162  Q
    ||||||||||  |||| || |||| | ||||||||||||  |||||  ||||||||||||||||||||| |||| ||||||  |||| |||| ||||||     
T  29346918 accaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttca 29346819  T
Q  163 cctgcttcttct 174  Q
    ||||||||||||    
T  29346818 cctgcttcttct 29346807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 51524961 - 51524871
Alignment:
Q  89 agctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 179  Q
    |||||||||||   ||||||  |||||||||||||||||||||||||| ||||||  |||| ||||||| | | |||||||||||| ||||    
T  51524961 agctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttcttt 51524871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 31067276 - 31067178
Alignment:
Q  83 caagacagctttggaggtatccttttaagcacgggtcctcatt-ccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 180  Q
    ||||||||  |||||| ||  |||||| ||||||||||||||| ||| ||||||| ||||||| | || ||||||||| | | |||||||||| |||||    
T  31067276 caagacaggattggagttacacttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttt 31067178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 49491876 - 49491995
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||| ||||| | |||| || ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49491876 ttgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttg 49491974  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    ||| | |||||||||||||||    
T  49491975 ttcacatgcttcttctgcttt 49491995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 50903480 - 50903598
Alignment:
Q  61 gaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgtt 160  Q
    |||||||||| || ||||||| |||| | |||||||||||| |  |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50903480 gaaccaactaatcggtatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgtt 50903579  T
Q  161 cgcctgcttcttctgcttt 179  Q
    | |||||||||||||||||    
T  50903580 cacctgcttcttctgcttt 50903598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 13061962 - 13062079
Alignment:
Q  63 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 162  Q
    ||||| ||||| |||| || |||| | ||||||||||||  ||||| |||||||||||||||| |||||||||| ||||||  |||| |||||||||||     
T  13061962 accaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttca 13062061  T
Q  163 cctgcttcttctgctttt 180  Q
    |||||||||||| |||||    
T  13062062 cctgcttcttcttctttt 13062079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 3374424 - 3374306
Alignment:
Q  62 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 161  Q
    |||||||||||| |||  |  |||| ||||||||||| || ||||||  ||||  |||||||||||||||||||| || ||||  |||||||||||||||    
T  3374424 aaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttc 3374325  T
Q  162 gcctgcttcttctgctttt 180  Q
     | |||||||||| |||||    
T  3374324 acttgcttcttcttctttt 3374306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 34566273 - 34566343
Alignment:
Q  89 agctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    |||||||| | || |||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  34566273 agctttggggatacccttttaaacacgagtcctcattccagctgagttgaagctagtagacttcactttgt 34566343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 41035024 - 41035142
Alignment:
Q  62 aaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttc 161  Q
    |||||||||||||| || || ||||  |||||||||||   | ||||  |||||||||||||||||||||||||| ||||||| ||||||||   | |||    
T  41035024 aaccaactattcagaatttgccaaggtagctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattc 41035123  T
Q  162 gcctgcttcttctgctttt 180  Q
     |||||||||||| |||||    
T  41035124 acctgcttcttcttctttt 41035142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 17114741 - 17114830
Alignment:
Q  90 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 179  Q
    |||||||||||| ||||||   || |||||||||||| ||| ||||| ||||||| |||||||||||||||| | || ||||||| ||||    
T  17114741 gctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttcttt 17114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 19394156 - 19394244
Alignment:
Q  92 tttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgctttt 180  Q
    |||| ||||| ||||||  ||||||||||||||||| ||| |||| |||| || ||||||||||||| || | |||||||||| |||||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttt 19394244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 39332425 - 39332359
Alignment:
Q  92 tttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    |||| ||||| ||||||  ||||||||||||||| |||||||||| |||| || |||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagcaagcaggcttcactttg 39332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 49491732 - 49491774
Alignment:
Q  15 gaaatggcagaagctactagcttaacacccaggttcacaaaga 57  Q
    ||||||||||||||||||  || ||||||||||||||||||||    
T  49491732 gaaatggcagaagctactgactaaacacccaggttcacaaaga 49491774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 50903328 - 50903369
Alignment:
Q  14 agaaatggcagaagctactagcttaacacccaggttcacaaa 55  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||    
T  50903328 agaaaaggcagaagctactagctaaacacccgggttcacaaa 50903369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 26449532 - 26449652
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||  ||||||| | || ||| |||||||||| ||||||   |||| |||||||||||||||||| |||||||||||||||||||| ||    
T  26449532 ttgaaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctg 26449631  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    ||| |||||||||||||||||    
T  26449632 ttcacctgcttcttctgcttt 26449652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 19407870 - 19407954
Alignment:
Q  90 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttct 174  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| |||  ||||||||||| ||||||||||||    
T  19407870 gctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttct 19407954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 24239839 - 24239954
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    |||| |||||||||  |||| || ||||| |||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||||||||     
T  24239839 ttgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcacttta 24239938  T
Q  159 ttcgcctgcttcttct 174  Q
    ||| ||| ||||||||    
T  24239939 ttcacctacttcttct 24239954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 16832137 - 16832249
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    |||||| ||||||  |||| || ||||||||||||||||| | |||||| | |||| |||||||||||  ||||||| ||| ||||||||||||||||||    
T  16832137 tgaaccgactattatgtatctgccaagacagctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgt 16832236  T
Q  160 tcgcctgcttctt 172  Q
    || | ||||||||    
T  16832237 tcacatgcttctt 16832249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 37050094 - 37050003
Alignment:
Q  90 gctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctag-taggcttcactttgttcgcctgcttcttctgctttt 180  Q
    |||||||||||| ||||||  ||||| |||||||||||||||||||| || ||||  |||||||||||||||| | || ||||||| |||||    
T  37050094 gctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttt 37050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 18522296 - 18522369
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctga 133  Q
    ||||||||||||||  ||| || |||| |  ||||||||| |||||||| ||||||| ||||||||||||||||    
T  18522296 tgaaccaactattctatatctgccaagtcgactttggaggcatccttttgagcacggatcctcattccggctga 18522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 16593766 - 16593886
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    |||||||||||||  |||  || ||||||| |||||| | ||  |||||  |||||||| |||||||||||| |||| || |||| |||| |||||||||    
T  16593766 tgaaccaactattatgtagctgccaagacaactttggcgttactcttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgt 16593865  T
Q  160 tcgcctgcttcttctgctttt 180  Q
     | | ||||||| || |||||    
T  16593866 gcacgtgcttctacttctttt 16593886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 4263365 - 4263480
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||| |||| || |||||||  |||||||| | |||||| ||||||||||||||||||||||||||| || |||| |||||||| ||||    
T  4263365 ttgaaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttg 4263464  T
Q  159 ttcgcctgcttcttct 174  Q
    ||  | ||||||||||    
T  4263465 tttacatgcttcttct 4263480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 25167967 - 25167847
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||||||||| |||| || |||| | |||||||||||| ||||||  ||| | |||||| ||||||||||||| || |||| |||||||||||||    
T  25167967 ttgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttg 25167868  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    ||| | || ||||||| ||||    
T  25167867 ttcacatgtttcttcttcttt 25167847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 10990119 - 10990028
Alignment:
Q  88 cagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 179  Q
    |||||||||||| | ||||||  ||||| ||||||||| ||||| |||| ||||||| ||| |||||||||||| | |||| ||||| ||||    
T  10990119 cagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttcttt 10990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 3949458 - 3949338
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||| ||||||||| | || || |||| | |||||||||||| |||| | | |||| |||||||||| |||| |||| || |||  | ||||||||||     
T  3949458 ttgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcacttta 3949359  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    ||| |||| ||||||| ||||    
T  3949358 ttcacctgtttcttcttcttt 3949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 10382 - 10262
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    |||||||||||||  |||  || |||||||||||||||| ||  |||||| |||||||||||||||||||||||||| || |||| |||| |||||||||    
T  10382 tgaaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgt 10283  T
Q  160 tcgcctgcttcttctgctttt 180  Q
     | | |||||||||| |||||    
T  10282 gcacgtgcttcttcttctttt 10262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 8831219 - 8831333
Alignment:
Q  60 tgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgt 159  Q
    ||||| ||||||||||||  || | ||||| |||||||| ||  ||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  8831219 tgaactaactattcagtagctgtcgagacaactttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgt 8831318  T
Q  160 tcgcctgcttcttct 174  Q
    ||   ||||||||||    
T  8831319 tcatgtgcttcttct 8831333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 27786782 - 27786903
Alignment:
Q  58 tttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcacttt 157  Q
    |||||||||||||||  |||| || ||||  ||||||||||| | | ||||  |||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  27786782 tttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcacttt 27786881  T
Q  158 gttcgcctgcttcttctgcttt 179  Q
     |||  |||||| |||| ||||    
T  27786882 attcatctgcttattcttcttt 27786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 29369223 - 29369107
Alignment:
Q  63 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 162  Q
    ||||||||||| |||| || |||| | | |||||| ||||||||||  |||||||||||||||| |||| |||| ||||| | |||| ||||||| |||     
T  29369223 accaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattca 29369124  T
Q  163 cctgcttcttctgcttt 179  Q
    | |||||||||| ||||    
T  29369123 cgtgcttcttcttcttt 29369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 36206422 - 36206536
Alignment:
Q  65 caactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcgcc 164  Q
    |||||| ||| ||| || |||| || ||||||||| |  |||||| ||||| |||||||||||| || |||| ||||||| |||||||||||| |||       
T  36206422 caactagtcactatctgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatt 36206521  T
Q  165 tgcttcttctgcttt 179  Q
    |||||||||| ||||    
T  36206522 tgcttcttcttcttt 36206536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 36868417 - 36868296
Alignment:
Q  58 tttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcacttt 157  Q
    |||||||||||||||  |||| || ||||  ||||||||||| | ||||||   |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  36868417 tttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcacttt 36868318  T
Q  158 gttcgcctgcttcttctgcttt 179  Q
     ||| | |||||||||| ||||    
T  36868317 attcacttgcttcttcttcttt 36868296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 19215502 - 19215391
Alignment:
Q  63 accaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttgttcg 162  Q
    ||||||||||| |||| || |||| ||| |||| ||||| ||||||  || ||||||||||||| ||||||||| |||||||  ||| |||||||||||     
T  19215502 accaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttca 19215403  T
Q  163 cctgcttcttct 174  Q
    ||||||||||||    
T  19215402 cctgcttcttct 19215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 36150641 - 36150721
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaa 139  Q
    |||| |||||||||  ||||||| | ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  36150641 ttgagccaactatttggtatatgccgaggtagctttggaggtatccttttgggcacgagtcctcattccggctgagttgaa 36150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 788271 - 788391
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggcttcactttg 158  Q
    ||||||||| |||||  |||||| |||| | |||||||||| | ||||||  ||||| ||||||||  || ||||||| ||| ||| |||||||| ||||    
T  788271 ttgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttg 788370  T
Q  159 ttcgcctgcttcttctgcttt 179  Q
    |||  ||||||||||| ||||    
T  788371 ttcatctgcttcttcttcttt 788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 151
Target Start/End: Original strand, 32278702 - 32278794
Alignment:
Q  59 ttgaaccaactattcagtatatggcaagacagctttggaggtatccttttaagcacgggtcctcattccggctgagttgaagctagtaggctt 151  Q
    ||||||| ||||||| |||| || |||| | |||||||||||| ||||||  | |||  || |||||||||||||||| || |||| ||||||    
T  32278702 ttgaacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggctt 32278794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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