View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21239_low_29 (Length: 301)
Name: NF21239_low_29
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 13265399 - 13265674
Alignment:
| Q |
16 |
cattacaactcaacaatattgtacatttcacatgcagaatgtgaaaatctcagtcttataataaaaggagttaagcaatatgcattnnnnnnnnncttcc |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13265399 |
cattacatctcaacaatattgtacatttcacatgcagaatgtgaaaatctcagtcttataataaaaggagttaagcaatatgcattaaaaaaaaacttcc |
13265498 |
T |
|
| Q |
116 |
acttaacacaaaagttcaattctgcttaagatcttgaagaggttgcctcttagcaaatttattcctagacatcactgacccaacttcttccttcttgtca |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13265499 |
acttaacacaaaagttcaactctgcttaagatcttgaagaggttgcctcttagcaaatttattcctagacatcactgacccaacttcttccttcttgtca |
13265598 |
T |
|
| Q |
216 |
aatttaatgttctctttatgtatcattggtgtagcttttgatggtgagtccaacttcttttgaaaagtatcttcat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
13265599 |
aatttaatgttctctttatgtatcattggtgtagcctttgatggtgagtccaacttcttaggataagcatcttcat |
13265674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 13257603 - 13257766
Alignment:
| Q |
128 |
agttcaattctgcttaagatcttgaagaggttgcctcttagcaaatttattcctagacatcactgacccaacttcttccttcttgtcaaatttaatgttc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
13257603 |
agttcaattctgcttaagatcttgaagaggttgcctcttagcaaatttattcctagacatcactgacccaactttatcctccttgtcaaatttaatgttc |
13257702 |
T |
|
| Q |
228 |
tctttatgtatcattggtgtagcttttgatggtgagtccaacttcttttgaaaagtatcttcat |
291 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
13257703 |
tctttatgtatcattggtgtagcctttgatggtgagaccaacttcttttgataagcatcttcat |
13257766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 13257382 - 13257467
Alignment:
| Q |
16 |
cattacaactcaacaatattgtacatttcacatgcagaatgtgaaaatctcagtcttataataaaaggagttaagcaatatgcatt |
101 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||| ||||||||| ||||| |
|
|
| T |
13257382 |
cattacaactccacaatattgtacatttcacatgcaaaatgtgaaaatctcaatcttatcataaaaagagctaagcaataagcatt |
13257467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University