View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_3 (Length: 569)
Name: NF21239_low_3
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 14162270 - 14161730
Alignment:
| Q |
11 |
acatcatcaactgatgtattcttactgcctccccaacgccgctcgatgatttccgcatgtaaaggtgctgttagatagcttttctcagctttctttaaaa |
110 |
Q |
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| T |
14162270 |
acatcatcaactgttgtattcttactacctccccaacgccgctcgatgatttcagcgtgtaaaggtgctgttaaatagcttttctcagctttctttaaga |
14162171 |
T |
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| Q |
111 |
cctcagctcctttagaatcatttggtaagtttgttatctgtttcttcaaaaacgccggcggaagaatgtcgtcaaccacagctcgagctatgaaaagtgc |
210 |
Q |
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| T |
14162170 |
cctcagctcctttagaatcatttggtaagtttgctatctgtttcttcaaaaacgccggcggaagaatgtcgtcaaccacagctcgagctatgaaaagtgc |
14162071 |
T |
|
| Q |
211 |
tagaatatcaaccgtgtccggtatatctacaatcaaatcatcagccgattcgactaatttggtgaatcctttgtaaacttgtgaaggatgaattatgtca |
310 |
Q |
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| T |
14162070 |
tagaatatcaaccgtgtccggtatatctacaatcaaatcatcagccgattcgactaatttggtgaatcctttgtaaacttgtgaaggatgaattatgtca |
14161971 |
T |
|
| Q |
311 |
gcataaagtgcagataagagaattgcagccatttctttttctttgtcgtgtctgtccattgacattgagacaagctttttgacaaaatagtagctgtatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14161970 |
gcataaagtgcagataagagaattgcagccatttctttttctttgtcgtgtctgtccattgacattgagacaagctttttgacaaaatagtagctgtatt |
14161871 |
T |
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| Q |
411 |
ctggtttaccaatttctctaacttcactcattgttgcgacaacgtcgtctgtggcaaagtattcttccactatcattgtagcttttttcttgtactcttc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14161870 |
ctggtttaccaatttctctaacttcactcattgttgcgacaacgtcgtctgtggcaaagtattcttccactattattgtagcttttttcttgtactcttc |
14161771 |
T |
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| Q |
511 |
caatgcagtgtccgttttcttatcatttgaatcatcgaatt |
551 |
Q |
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| T |
14161770 |
caatgcagcgttcgttttcttatcatttgaatcatcgaatt |
14161730 |
T |
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