View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_33 (Length: 271)

Name: NF21239_low_33
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_33
NF21239_low_33
[»] chr7 (2 HSPs)
chr7 (11-255)||(5952950-5953194)
chr7 (23-255)||(13583300-13583533)
[»] chr6 (4 HSPs)
chr6 (14-255)||(7022579-7022820)
chr6 (14-255)||(26292349-26292592)
chr6 (14-255)||(34252067-34252310)
chr6 (25-255)||(10570408-10570639)
[»] chr8 (2 HSPs)
chr8 (14-255)||(15917318-15917559)
chr8 (14-146)||(8567670-8567802)
[»] chr1 (3 HSPs)
chr1 (14-255)||(5171019-5171260)
chr1 (14-255)||(6770772-6771018)
chr1 (17-170)||(33931552-33931707)
[»] chr3 (3 HSPs)
chr3 (14-255)||(55429017-55429259)
chr3 (14-255)||(29018675-29018915)
chr3 (23-89)||(17065241-17065307)
[»] chr4 (4 HSPs)
chr4 (15-255)||(19816408-19816648)
chr4 (87-241)||(21374898-21375052)
chr4 (197-233)||(31619229-31619265)
chr4 (16-57)||(1804489-1804530)
[»] chr5 (4 HSPs)
chr5 (14-222)||(35946818-35947027)
chr5 (14-168)||(28175138-28175284)
chr5 (185-236)||(28175088-28175139)
chr5 (14-66)||(6642291-6642343)
[»] chr2 (3 HSPs)
chr2 (12-228)||(29763071-29763290)
chr2 (153-241)||(16091065-16091153)
chr2 (14-51)||(9992988-9993025)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 5952950 - 5953194
Alignment:
Q  11 cataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  5952950 cataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatca 5953049  T
Q  111 tacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattat 210  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5953050 tacgcaacacgaaggccatgaaaaatgacatacaattcggctgccaaacaagaagtaataccacaaaattcagaaaaacccagcaaccaatcaccattat 5953149  T
Q  211 tgtttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5953150 tgtttctaataagacctccaaaacctgatctcccaggattagaaa 5953194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 13583533 - 13583300
Alignment:
Q  23 aggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacga 122  Q
    ||||||| ||| ||| |||||| ||||||||| || | | |||| ||||||||| ||||||||||||||| || |||| ||  ||||||| |||| ||||    
T  13583533 aggatgacgaggttgaacatccaacatgattagataatgagccaccctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatacga 13583434  T
Q  123 aggccatgaaaaatgacatacaattcgaccgccaaacaagaagt-aatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaata 221  Q
    |||| ||||||  || ||||||||||  |    || |||||| | ||||| ||||||  |||  |||| || |||| ||| ||||||||||||||| |||    
T  13583433 aggctatgaaaggtggcatacaattcagctctgaagcaagaaataaataccacaaaaaccagtgaaactcaacaactaattaccattattgtttctcata 13583334  T
Q  222 agacctccaaaacctgatctcccaggattagaaa 255  Q
    ||| ||||||||| |||| ||| | |||||||||    
T  13583333 agatctccaaaacgtgatatcctatgattagaaa 13583300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 7022820 - 7022579
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||    
T  7022820 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatac 7022721  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 213  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  7022720 gcaatacgaaggccatgaaaaatgacatacaattcggccgccaagcaagaagtaataccacaaaatccaaaaaaacccagcaaccaatcaccattattgt 7022621  T
Q  214 ttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  7022620 ttctaataagacctccaaaacctgatctttcaggattagaaa 7022579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 26292349 - 26292592
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    |||||||||||||||| |||||||||||  ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  26292349 aggagcatgaggatgacgagattggacactcgacatgtttaaatcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatac 26292448  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattc--agaaaaacccagcaaccaatcaccattatt 211  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |  | ||||||||||||||||||||||||||||    
T  26292449 gcaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatccataaaaaaacccagcaaccaatcaccattatt 26292548  T
Q  212 gtttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||    
T  26292549 gtttctaataagacctccaaaaactgatcttccatgattagaaa 26292592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 34252310 - 34252067
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccga--catgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcat 111  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||||||||| | ||||||||||||||| ||| ||| |||||||    
T  34252310 aggagcatgaggatgataagattggacatccgagacatgattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcat 34252211  T
Q  112 acgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattatt 211  Q
    ||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  34252210 acgtaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatacagaaaaatccagcaaccaatcaccattatt 34252111  T
Q  212 gtttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    ||||||||||| |||||||||||| |||||  ||| ||||||||    
T  34252110 gtttctaataaaacctccaaaacccgatctttcagaattagaaa 34252067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 10570639 - 10570408
Alignment:
Q  25 gatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaag 124  Q
    ||||| ||| ||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  10570639 gatgacgaggttggatatccgacataattaaattaagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaag 10570540  T
Q  125 gccatgaaa-aatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataag 223  Q
     ||||||||   |  |||||||||||||| |||| ||| || |||||| ||||||   ||||| ||||| ||||||||||   |||| ||||||||||||    
T  10570539 accatgaaattgtttcatacaattcgaccaccaagcaaaaaataataccacaaaaactagaaagacccaacaaccaatcattgttatggtttctaataag 10570440  T
Q  224 acctccaaaacctgatctcccaggattagaaa 255  Q
    ||||||||||||| || | |||||||||||||    
T  10570439 acctccaaaaccttatattccaggattagaaa 10570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 15917318 - 15917559
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  15917318 aggagcatggggatgatgagattggacatccgacatgattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatac 15917417  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 213  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||  | |||||||||||||||||||||||||| | |    
T  15917418 gcaatacgaaggccatgaaaaatgacatacaatttggccgccaagcaagaagtaataccacaaaatctataaaaacccagcaaccaatcaccattacttt 15917517  T
Q  214 ttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  15917518 ttcaaataagacctccaaaacctgatctcccaggattagaaa 15917559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 8567670 - 8567802
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    |||||||||| ||||||||| || ||||||||||||||||| |||||  |||| | ||||||||||||||||||||||||||   || ||||||||||||    
T  8567670 aggagcatgaagatgatgaggttcgacatccgacatgattagatcaaaagccaccatagaatctgattcaagaataatgttcccttgacccgcatcatac 8567769  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaat 146  Q
    |||| ||||||||| ||||||||||||||||||    
T  8567770 gcaatacgaaggccgtgaaaaatgacatacaat 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 5171260 - 5171019
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||| |||||||||||||    
T  5171260 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatac 5171161  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 213  Q
    |||| || |||||||||||||||| ||||||||||| |||||||  |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  5171160 gcaatacaaaggccatgaaaaatggcatacaattcggccgccaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgt 5171061  T
Q  214 ttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
      |||||||||||||||||||||||||| |||||||||||||    
T  5171060 cactaataagacctccaaaacctgatcttccaggattagaaa 5171019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 6771018 - 6770772
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  6771018 aggagcatgaggatgatgagattcgacattcgacatgattaaatcaagagccatcctataatttgattcaagaataatgttcatgtgacccgcatcatac 6770919  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcag-----aaaaacccagcaaccaatcaccatt 208  Q
    |||| | |||| |||| ||||||| ||||||||||| ||||||| ||||||||||||| |||||||  ||     |||||||||||||||||||||||||    
T  6770918 gcaatatgaagaccataaaaaatggcatacaattcggccgccaagcaagaagtaataccacaaaatctagaagaaaaaaacccagcaaccaatcaccatt 6770819  T
Q  209 attgtttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  6770818 attgtttcttataagacctccaaaacctgatctcccatgatcagaaa 6770772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 33931552 - 33931707
Alignment:
Q  17 agcatgaggatgatgagattggacatccgacatgattaaatcaa--gggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacg 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | | ||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  33931552 agcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacg 33931651  T
Q  115 caacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaata 170  Q
    ||| |||||| |||| ||||||| ||||||||||| ||| ||||||||||||||||    
T  33931652 caatacgaagaccataaaaaatggcatacaattcggccgtcaaacaagaagtaata 33931707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 55429017 - 55429259
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55429017 aggagcatgaggatgatgagattcgacatccgacatgattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatac 55429116  T
Q  114 gcaacacgaaggccatg-aaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattg 212  Q
    |||| ||||||||| || ||||||| ||||||||||  | ||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  55429117 gcaatacgaaggccgtgcaaaaatggcatacaattcagctgccaagcaggaagtaataccacaaaatccagaaaaacccagcaaccagtcaccattattg 55429216  T
Q  213 tttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  55429217 tttctaataagacctccaaaacctgatctcccaggatttgaaa 55429259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 29018675 - 29018915
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| | || | |||||||| |||||||||||||||||||||| ||||||||| ||    
T  29018675 aggagcatgaggatgatgaggttggacatccgacatgattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacac 29018774  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgt 213  Q
     ||| ||||||||||||||||||| ||||||||| | | ||||| ||||||||||||| |||||| ||||||||||  | || ||||||||||||||| |    
T  29018775 acaatacgaaggccatgaaaaatggcatacaatttggcagccaagcaagaagtaataccacaaaaatcagaaaaacaaaacatccaatcaccattatt-t 29018873  T
Q  214 ttctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    || | ||||||||||||||||||||||| ||| |||||||||    
T  29018874 ttttgataagacctccaaaacctgatcttccaagattagaaa 29018915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 17065241 - 17065307
Alignment:
Q  23 aggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaata 89  Q
    ||||||||||| ||||| || |||||| ||||||||||| | || ||||||||| ||||||||||||    
T  17065241 aggatgatgaggttggaaattcgacataattaaatcaagagtcaccctagaatcggattcaagaata 17065307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 19816408 - 19816648
Alignment:
Q  15 ggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacg 114  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  19816408 ggagcatgaggatgatgagattcaacatccgacatgattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatg 19816507  T
Q  115 caacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtt 214  Q
    ||| ||||||||||||||||||  ||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  19816508 caatacgaaggccatgaaaaatagcatacaattcagccgccaagcaagaagtaataccacaaaatccagaaaaaccccggaaccaatcaccattattgtt 19816607  T
Q  215 tctaataagacctccaaaacctgatctcccaggattagaaa 255  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  19816608 tctaataagacctccaaaacctgatcttccagaattagaaa 19816648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 21375052 - 21374898
Alignment:
Q  87 ataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaa 186  Q
    ||||||||| |||||||||||| ||| |||| |||||||| |||||||||| ||||||||| | ||| |||  |||||||||||| ||||||||||||||    
T  21375052 ataatgttcctgtggcccgcattatatgcaatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaataccacaaaattcagaaa 21374953  T
Q  187 aacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 241  Q
    |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21374952 aacccaacaaccaatcaccgttattgtttctaataaaacctccaaaacctgatct 21374898  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 31619229 - 31619265
Alignment:
Q  197 ccaatcaccattattgtttctaataagacctccaaaa 233  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31619229 ccaatcaccattattgtttcttataagacctccaaaa 31619265  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 1804530 - 1804489
Alignment:
Q  16 gagcatgaggatgatgagattggacatccgacatgattaaat 57  Q
    |||||||| ||||||||| ||||||||||||||| |||||||    
T  1804530 gagcatgaagatgatgagcttggacatccgacataattaaat 1804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 35946818 - 35947027
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    ||||||||  |||||||||  |||| ||||| ||||||||| |||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  35946818 aggagcatatggatgatgatgttgggcatccaacatgattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcatac 35946917  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcag-aaaaacccagcaaccaatcaccattattg 212  Q
    |||| || |||| | ||||||||||||| ||||||| ||| ||||||||||||||||| ||||||  ||| |||||| || |||||||||| |||||||     
T  35946918 gcaatacaaaggtcttgaaaaatgacatgcaattcggccgtcaaacaagaagtaataccacaaaaaccagaaaaaacgcaacaaccaatcatcattatta 35947017  T
Q  213 tttctaataa 222  Q
    ||||| ||||    
T  35947018 tttcttataa 35947027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 28175284 - 28175138
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatac 113  Q
    ||||||||||  |||||||| ||| |||||||||| ||||| |||||| |||| ||        |||||||||||||||||||| |  || |||||||||    
T  28175284 aggagcatgaaaatgatgaggttgaacatccgacaagattagatcaagagccaccc--------gattcaagaataatgttcatattccctgcatcatac 28175193  T
Q  114 gcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaa 168  Q
     ||| ||||||| ||||||||||| |||| |||| ||||| ||| |||| |||||    
T  28175192 acaagacgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa 28175138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 28175139 - 28175088
Alignment:
Q  185 aaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacct 236  Q
    |||||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  28175139 aaaacccaacaacccatcaccattattgtttcttgtaagacctctaaaacct 28175088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 6642343 - 6642291
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatgattaaatcaagggcca 66  Q
    ||||| || ||||| ||||| |||||||||| |||||||||||||||| ||||    
T  6642343 aggagaataaggataatgaggttggacatccaacatgattaaatcaagagcca 6642291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 29763290 - 29763071
Alignment:
Q  12 ataggagcatgaggatgatgagattggacatccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcat 111  Q
    |||||||||| |||||||| |  ||||||||| ||| ||||||||||||| |||| ||||| |||  ||||||||||||||||| |||| ||| ||||||    
T  29763290 ataggagcataaggatgataaagttggacatctgacgtgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcat 29763191  T
Q  112 acgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaat---acaacaaaattcagaaaaacccagcaaccaatcaccatt 208  Q
    ||| || ||||||| |||||||||||||||| |||||   ||| || |||||||||||   || |||||| || | |||||||| ||| |||||||||||    
T  29763190 acgtaatacgaaggtcatgaaaaatgacatataattctgtcgctaagcaagaagtaataaaaccacaaaaatccggaaaacccaacaatcaatcaccatt 29763091  T
Q  209 attgtttctaataagacctc 228  Q
    ||||||||| ||||||||||    
T  29763090 attgtttcttataagacctc 29763071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 16091153 - 16091065
Alignment:
Q  153 gccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 241  Q
    |||||| |||||||||||| |||||| ||| | | ||||| |||  ||||||||| ||||||||| |||||||||||||||||| ||||    
T  16091153 gccaaataagaagtaataccacaaaaatcaaagatacccaacaataaatcaccatcattgtttcttataagacctccaaaacctaatct 16091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 9992988 - 9993025
Alignment:
Q  14 aggagcatgaggatgatgagattggacatccgacatga 51  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9992988 aggagcatgaggatgataagattggacatccgacatga 9993025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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