View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_34 (Length: 257)
Name: NF21239_low_34
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_34 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 2568811 - 2568573
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568811 |
agtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
2568712 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2568711 |
atttgattgctgttttggataagggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
2568612 |
T |
|
| Q |
219 |
tctgcaaagaagaccaaacaatttaatttctgattcttc |
257 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
2568611 |
tctgcaaagaagaccaaacaatttaatttcgtattcttc |
2568573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 2440513 - 2440750
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||| |
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| T |
2440513 |
agtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactattcaaaactgtg |
2440612 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||| |
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| T |
2440613 |
atttgattgctgttttggataagggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattactctttggtaag |
2440712 |
T |
|
| Q |
219 |
tctgcaaagaagaccaaacaatttaatttctgattctt |
256 |
Q |
| |
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||| |||||||||||||||||| ||||| ||||||||| |
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| T |
2440713 |
tctacaaagaagaccaaacaatataattgctgattctt |
2440750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 2672186 - 2671970
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
2672186 |
agtcaatctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtagcacataggttgagtactatacaaaattgcg |
2672087 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
2672086 |
atttgattgctgttttagacaagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcttattactctttggtaag |
2671987 |
T |
|
| Q |
219 |
tctgcaaagaagaccaa |
235 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
2671986 |
tctacaaagaagaccaa |
2671970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 2596370 - 2596157
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596370 |
agtcaatcagagaaattagtccaagatactttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
2596271 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| || || || |||||||| | |||||||||||||||||| |
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| T |
2596270 |
atttgattgctgtcttggataagggaattgttgttgagaaaggaacacattcgtctttgttatctttgggaccaagtggagtttattactctttggtaag |
2596171 |
T |
|
| Q |
219 |
tctgcaaagaagac |
232 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
2596170 |
tctacaaagaagac |
2596157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 2641026 - 2640805
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
2641026 |
agtcaatcagagaaattagtgcaagatgctttagaaagagttatggttggaaggacaagtgtagttgtcgcacataggttgagtactatacaaaattgtg |
2640927 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||| || |||||||| | |||||||||||| ||||| |
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|
| T |
2640926 |
atttgattgctgttttggataaggggattgttgttgaaaaaggaacacattcatctttgttgtctttgggaccaagtggagtttattactctttagtaag |
2640827 |
T |
|
| Q |
219 |
tctgcaaagaagaccaaacaat |
240 |
Q |
| |
|
||| ||||||||||||| |||| |
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| T |
2640826 |
tctacaaagaagaccaaccaat |
2640805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 2451235 - 2451450
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2451235 |
agtcaatcagagaagttagtgcaagatgctttagaaagggttatgattggaagaacaagtgtggttgtggctcataggttgagtactatacaaaattgtg |
2451334 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
|| |||||| ||||||||||||||| |||| |||||||||||||||||||| ||| ||||| ||||| |||||||| |||||||||||| ||||||| |
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|
| T |
2451335 |
atatgattgttgttttggataagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggaccaagtggagcttattactctatggtaag |
2451434 |
T |
|
| Q |
219 |
tctgcaaagaagacca |
234 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
2451435 |
tctacaaagaagacca |
2451450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 2592459 - 2592697
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||| |
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|
| T |
2592459 |
agtcaatcagagaaattagtccaagatgctttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtg |
2592558 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||||| |||||||||||||| || |||||||||||| |||| |
|
|
| T |
2592559 |
atttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggccaagtggagcatattactctttgataag |
2592658 |
T |
|
| Q |
219 |
tctgcaaagaagaccaaacaatttaatttctgattcttc |
257 |
Q |
| |
|
||| ||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
2592659 |
tctaaaaataagaccaaccaacataattattgattcttc |
2592697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 2624003 - 2624219
Alignment:
| Q |
19 |
agtcagtctgagaaattagtccaagatgctttagaaagggttatggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtg |
118 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
2624003 |
agtcaatctgagaaattagtccaagacactttagaaaaggtcatggttggaaggacaagcgtggttgtagcacataggttgagtactatccaaaactgtg |
2624102 |
T |
|
| Q |
119 |
atttgattgctgttttggataagggcgttgttgttgagaaaggaacacattcaaatttattgtcaaaagggccaagtggtgcttattactctttggtaag |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||| |||||||||||||| || |||||||||||| |||| |
|
|
| T |
2624103 |
atttgattgctgttttggataagggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggccaagtggagcatattactctttgataag |
2624202 |
T |
|
| Q |
219 |
tctgcaaagaagaccaa |
235 |
Q |
| |
|
||| |||| |||||||| |
|
|
| T |
2624203 |
tctacaaaaaagaccaa |
2624219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 17870180 - 17870107
Alignment:
| Q |
61 |
atggttggaaggacaagtgtggttgtggcacataggttgagtactatacaaaattgtgatttgattgctgtttt |
134 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
17870180 |
atggttggaaggactagtgtggttgtagcacataggttgagtaccatacacaattgtgatgttattgctgtttt |
17870107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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