View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_36 (Length: 250)
Name: NF21239_low_36
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 36423553 - 36423311
Alignment:
| Q |
8 |
tgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgttccaaggaaattggatttatcaagttcaa |
107 |
Q |
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| T |
36423553 |
tgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgttccaaggaaattggatttatcaagttcaa |
36423454 |
T |
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| Q |
108 |
ctctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtccattatctgtaatggacacaacctctctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423453 |
ctctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtccattatctgtaatggacacaacctctctc |
36423354 |
T |
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| Q |
208 |
ttatccatatcaaccaacacagttaaaccttctatcggtttca |
250 |
Q |
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| T |
36423353 |
ttatccatatcaaccaacacagttaaaccttctatcggtttca |
36423311 |
T |
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