View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_37 (Length: 250)

Name: NF21239_low_37
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_37
NF21239_low_37
[»] chr7 (2 HSPs)
chr7 (131-250)||(3417352-3417471)
chr7 (11-86)||(3417516-3417591)
[»] chr2 (6 HSPs)
chr2 (134-250)||(13440438-13440554)
chr2 (134-249)||(13448601-13448716)
chr2 (134-249)||(13455072-13455187)
chr2 (12-79)||(13448479-13448546)
chr2 (16-86)||(13454954-13455024)
chr2 (16-86)||(13440320-13440390)
[»] chr5 (4 HSPs)
chr5 (134-249)||(28385572-28385687)
chr5 (134-250)||(12540923-12541039)
chr5 (12-79)||(12540801-12540868)
chr5 (9-77)||(28385447-28385515)
[»] scaffold0536 (1 HSPs)
scaffold0536 (134-246)||(6337-6449)
[»] chr4 (7 HSPs)
chr4 (136-245)||(48974349-48974458)
chr4 (134-246)||(48958385-48958497)
chr4 (9-77)||(48965442-48965510)
chr4 (16-86)||(48958264-48958337)
chr4 (134-200)||(48912217-48912283)
chr4 (16-86)||(48961413-48961486)
chr4 (154-200)||(48965587-48965633)
[»] chr6 (4 HSPs)
chr6 (134-242)||(12483294-12483402)
chr6 (138-246)||(12589995-12590103)
chr6 (16-50)||(12590197-12590231)
chr6 (54-86)||(12483450-12483482)
[»] chr8 (1 HSPs)
chr8 (165-242)||(12641311-12641388)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 3417471 - 3417352
Alignment:
Q  131 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  231 gtacaacactgagttaactt 250  Q
    ||||||||||||||||||||    
T  3417371 gtacaacactgagttaactt 3417352  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 3417591 - 3417516
Alignment:
Q  11 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 13440438 - 13440554
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  234 caacactgagttaactt 250  Q
    |||||| ||||||||||    
T  13440538 caacaccgagttaactt 13440554  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 13448601 - 13448716
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  234 caacactgagttaact 249  Q
    ||||||||||||||||    
T  13448701 caacactgagttaact 13448716  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 13455072 - 13455187
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  234 caacactgagttaact 249  Q
    ||| ||||||||||||    
T  13455172 caatactgagttaact 13455187  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 13448479 - 13448546
Alignment:
Q  12 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 79  Q
    ||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 13454954 - 13455024
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 13440320 - 13440390
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 28385572 - 28385687
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  234 caacactgagttaact 249  Q
    ||  ||||||||||||    
T  28385672 cacaactgagttaact 28385687  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 250
Target Start/End: Original strand, 12540923 - 12541039
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  234 caacactgagttaactt 250  Q
    || ||||||||||||||    
T  12541023 caccactgagttaactt 12541039  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 12540801 - 12540868
Alignment:
Q  12 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 79  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 28385447 - 28385515
Alignment:
Q  9 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 77  Q
    |||||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

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Target: scaffold0536 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 6449 - 6337
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  234 caacactgagtta 246  Q
    |||||||||||||    
T  6349 caacactgagtta 6337  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 48974349 - 48974458
Alignment:
Q  136 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 235  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  236 acactgagtt 245  Q
     |||||||||    
T  48974449 gcactgagtt 48974458  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 246
Target Start/End: Original strand, 48958385 - 48958497
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  234 caacactgagtta 246  Q
    |||||||||||||    
T  48958485 caacactgagtta 48958497  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 48965442 - 48965510
Alignment:
Q  9 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 77  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 48958264 - 48958337
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||| ||||||| |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 48912283 - 48912217
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 200  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| |||||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatc 48912217  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 86  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  154 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 200  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 12483402 - 12483294
Alignment:
Q  134 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 233  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  234 caacactga 242  Q
    |||||||||    
T  12483302 caacactga 12483294  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 12590103 - 12589995
Alignment:
Q  138 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 237  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  238 actgagtta 246  Q
    || ||||||    
T  12590003 acagagtta 12589995  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
Q  16 tgtggggcccaacccctaacgatcaaacccttctt 50  Q
    ||||||||||||||||||| |||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  54 aatgtttctctcctcaaatcccttcgacaacca 86  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 12641388 - 12641311
Alignment:
Q  165 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactga 242  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| ||||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactga 12641311  T

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