View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_38 (Length: 249)
Name: NF21239_low_38
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 1848681 - 1848478
Alignment:
| Q |
23 |
aaagattaacttgaattaatagcatctaaacataaaaccaaagagaaactaacaaagaaaatcatgaaaattaagacttcaatgagaagcttctcagcta |
122 |
Q |
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| T |
1848681 |
aaagattaacttgaattaatagcatctaaacataaaaccaaagagaaactaacaaagaaaat---------taagacttcaatgagaagcttctcagcta |
1848591 |
T |
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| Q |
123 |
agaaatccagcgcctgaaaacagaaaagatttacagacactaacaacgt----atattacagtgacatgttgacactagtatttaattgattgaagtaat |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1848590 |
agaaatccagcgcctgaaaacacaaaagatttacagacactaacaacgtatatatattacagtgacatgttgacactagtatttaattgattgaagtaat |
1848491 |
T |
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| Q |
219 |
catatgtaggtgt |
231 |
Q |
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||||||||||||| |
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| T |
1848490 |
catatgtaggtgt |
1848478 |
T |
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