View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21239_low_4 (Length: 568)
Name: NF21239_low_4
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 15 - 560
Target Start/End: Complemental strand, 42312182 - 42311630
Alignment:
| Q |
15 |
atattcatgttttttgaaaattaaaaagatgtcaagatgtgcattcaggaataaatgtccgggcttatgtttgactgtagatacagctagtatcctattc |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
42312182 |
atattcatgttttttagaaattaaaaagatgtcaagatgtgaattcaggaataaatgtccgggcttatgtttgactgtagatacagctagtatccaactc |
42312083 |
T |
|
| Q |
115 |
ctcattgttatttagctttgatggaaaattgttttagttattttgaaattattggagttggtgcatttttaggaattctataaggcctcaaaatccaagt |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42312082 |
ctcattgttattcagctttgatggaaaattgttttagttattttgaaattatttaagttggtgcatttttaggaattctataagacctcaaaatccaagt |
42311983 |
T |
|
| Q |
215 |
atgatagtgatcctgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttttacttcatgttttttctctt-----------ctat |
303 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42311982 |
atgatagtgatcccgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttttacttcatgttttttctcttctttttgtcacctat |
42311883 |
T |
|
| Q |
304 |
ttgctagatcacagggaattggttatacatttttgtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42311882 |
ttgctagatcacagggaattggttatacatttttgtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtg |
42311783 |
T |
|
| Q |
404 |
aagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctagctagtttcttttgaatctcccatgt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
42311782 |
aagttagtagggctgaatataacaaggtctatcgacgccttggagttcatttggaggaaaaggtaatggtt----ctagtttcttttgaatctcccatga |
42311687 |
T |
|
| Q |
504 |
ggaattccttatcccttttctgttcttttaatttagtgttgggcctcttagaattat |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42311686 |
ggaattccttatcccttttctgttcttttaatttagtgttgggcctcttagaattat |
42311630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 47976541 - 47976378
Alignment:
| Q |
116 |
tcattgttatttagctttgatggaaaattgttttagttattttgaaattattggagttggtgcatttttaggaattctataaggcctcaaaatccaagta |
215 |
Q |
| |
|
|||| |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
47976541 |
tcatcgttatttagcttcgatggaaaattattttacttattctgaaattattggagttggtgcatttttaggcattctataaggcctcaaaattgaagtt |
47976442 |
T |
|
| Q |
216 |
tgatagtgatcctgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttt |
279 |
Q |
| |
|
|||||||||||||||||| || | ||||||| | |||||| ||| ||||||||||||||||| |
|
|
| T |
47976441 |
tgatagtgatcctgatttcaagaaaaaggcacagctgtcagtagtcgagctccaggtaaatttt |
47976378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 300 - 478
Target Start/End: Complemental strand, 47976333 - 47976151
Alignment:
| Q |
300 |
ctatttgctagatcacagggaattggttatacattttt-gtatgcctgaattttgatttcagagagggga---tcccaagtatcgcgaagcatggcataa |
395 |
Q |
| |
|
|||||||| || ||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||| | | |
|
|
| T |
47976333 |
ctatttgcaaggtcatggggaattggttttacattttttgtatgcctgaattttgatttcagagtggggaggatcccaagtatcgcacggcatggaaaca |
47976234 |
T |
|
| Q |
396 |
aatttgtgaagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
478 |
Q |
| |
|
|||||| || |||||||| |||||| ||||||||||||||| ||||||||| | | ||||||||||| |||||||||||||| |
|
|
| T |
47976233 |
aatttgcgatattagtaggactgaatttaacaaggtctatcagcgccttggaatccgtttggaggaaatggtaagggttctag |
47976151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 318 - 478
Target Start/End: Original strand, 51566497 - 51566658
Alignment:
| Q |
318 |
ggaattggttatacattttt-gtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggc |
416 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||| ||||||||| | |
|
|
| T |
51566497 |
ggaattggttttacattttttgtctgcctgaattttgatttcagggaggggatcccaagtatcgcacggcatggaaacaaatttgtgatgttagtaggac |
51566596 |
T |
|
| Q |
417 |
tgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
478 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||| |
|
|
| T |
51566597 |
tgaatttaacaaggtctatcaacgccttggaattcgtttggaggaaatggtaaggattctag |
51566658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 116 - 293
Target Start/End: Original strand, 51566267 - 51566443
Alignment:
| Q |
116 |
tcattgttatttagctttgatggaaaattgttttagttattttgaaattattggagttgg-tgcatttttaggaattctataaggcctcaaaatccaagt |
214 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| | || |
|
|
| T |
51566267 |
tcattgtt-tttagctttgatggtaaattattttacttattctgaaattattggagttgggtgcatttttaggcattctataaggcctcaaaattgaggt |
51566365 |
T |
|
| Q |
215 |
atgatagtgatcctgattttaaaaccaaggcacgtcagtcagtggtcaagctccaggtaaatttttacttcatgttttt |
293 |
Q |
| |
|
|||||||||||||| |||||| || |||| |||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
51566366 |
ttgatagtgatcctgcttttaagttaaatgcacagcagtcagtggtcaagctccaggtaaa-ttttacttcaagttttt |
51566443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 338 - 478
Target Start/End: Original strand, 34030367 - 34030507
Alignment:
| Q |
338 |
gtatgcctgaattttgatttcagagaggggatcccaagtatcgcgaagcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatca |
437 |
Q |
| |
|
|||||| | |||||| || |||||| |||||| ||| ||||||| | |||||||| |||||||||| ||||||||||||| | | ||||||||||||| |
|
|
| T |
34030367 |
gtatgcattaatttttatctcagagtggggataccaggtatcgcaaggcatggcaacaaatttgtgatattagtagggctgagtttgacaaggtctatca |
34030466 |
T |
|
| Q |
438 |
acgccttggagttcatttggaggaaaaggtaagggttctag |
478 |
Q |
| |
|
||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
34030467 |
acgtcttggagttcaactggaggaaatggtaagggttctag |
34030507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 478
Target Start/End: Original strand, 5076254 - 5076347
Alignment:
| Q |
385 |
gcatggcataaaatttgtgaagttagtagggctgaatataacaaggtctatcaacgccttggagttcatttggaggaaaaggtaagggttctag |
478 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| | ||||| |||||||| | |||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
5076254 |
gcatggcaacaaatttgtgatgttagtagggctgagttcgacaagatctatcaatgtattggagttcaattggaggaaatggtaaggggtctag |
5076347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University