View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_40 (Length: 244)
Name: NF21239_low_40
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36423271 - 36423046
Alignment:
| Q |
1 |
ccttaatcaatcttctactctcttcaactggtgttccataccaccctgaagcgactggaaggcatgcaaggtctgctaaattcacaccgcgttttctaat |
100 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423271 |
ccttaatcaatcttctattctcttcaaccggtgttccataccaccctgaagcgactggaaggcatgcaaggtctgctaaattcacaccgcgttttctaat |
36423172 |
T |
|
| Q |
101 |
cgtgctgttaaactcgccactcttcaatggaacattgagtacagcaaccatttcctcaagtgtcattgtagggtatccagaagaacctggccttgtttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423171 |
cgtgctgttaaactcgccactcttcaatggaacatcgagtacagcaaccatttcctcaagtgtcattgtagggtatccagaagaacctggccttgtttca |
36423072 |
T |
|
| Q |
201 |
tggttggttatttcacttgtgctaag |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
36423071 |
tggttggttatttcacttgtgctaag |
36423046 |
T |
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