View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_43 (Length: 238)
Name: NF21239_low_43
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31724032 - 31724253
Alignment:
| Q |
1 |
agtaattacagtgtgtgcagctttgggaatgcttttacttgctgtttattttttctgcagattcaggaggagcattgttggtaaaactattctcctattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31724032 |
agtaattacagtgtgtgcagctttgggaatgcttttacttgctgtttattttttctgcagattcaggaggagcattgttggtaaaactattctcctattc |
31724131 |
T |
|
| Q |
101 |
tttaacatttgactgaaaacatggcattggctacaaagttctgannnnnnnnnctatttccattttctagggaagtcaaagacagaaggcaactatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31724132 |
tttaacatttgactgaaaacatggcattggctacaaagttctgatttttttttctatttccattttctagggaagacaaagacagaaggcaactatgtaa |
31724231 |
T |
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| Q |
201 |
ggcacctggatgatctggatat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31724232 |
ggcacctggatgatctggatat |
31724253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 31716808 - 31717001
Alignment:
| Q |
2 |
gtaattacagtgtgtgcagctttgggaatgcttttacttgctgtttattttttctgcagattcaggaggagcattgttggtaaaactattctcctattct |
101 |
Q |
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||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
31716808 |
gtaattacagtttctgcagctttgggaatgcttttacttgctatttattttttctacagactcaggaggagcattgttggtaaaactattcttccattct |
31716907 |
T |
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| Q |
102 |
ttaacatttgactgaaaacatggcattggctacaaagttctgannnnnnnnnctatttccattttctagggaagtcaaagacagaaggcaactatg |
197 |
Q |
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| T |
31716908 |
ccga-atttgaatgaaaatatgtcattggctacatagttcag-gttttttttttctttccattttctagggaagtcaaagacagaaggcaactatg |
31717001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 31722682 - 31722875
Alignment:
| Q |
2 |
gtaattacagtgtgtgcagctttgggaatgcttttacttgctgtttattttttctgcagattcaggaggagcattgttggtaaaactattctcctattct |
101 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
31722682 |
gtaattacagtttctgcagctttgggaatgcttttacttgctatttattttttctacagactcaggaggagcattgttggtaaaactattcttccattct |
31722781 |
T |
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| Q |
102 |
ttaacatttgactgaaaacatggcattggctacaaagttctgannnnnnnnnctatttccattttctagggaagtcaaagacagaaggcaactatg |
197 |
Q |
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| |||||| |||||| ||| ||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31722782 |
ccga-atttgaatgaaaatatgtcattggctacatagttcag-gttttttttttctttccattttctagggaagtcaaagacagaaggcaactatg |
31722875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 31701502 - 31701644
Alignment:
| Q |
2 |
gtaattacagtgtgtgcagctttgggaatgcttttacttgctgtttattttttctgcagattcaggaggagcattgttggtaaaactattctcctattct |
101 |
Q |
| |
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||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||| | ||||| |
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| T |
31701502 |
gtaataacagtttctgcagctttgggaatgcttttacttgctatttattttttctacagactcaggaggagcattgttggtaatactattcttccattct |
31701601 |
T |
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| Q |
102 |
ttaacatttgactgaaaacatggcattggctacaaagttctga |
144 |
Q |
| |
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||| |||||||| |||| |||||||||| |||| |||||||| |
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| T |
31701602 |
ctaatatttgactaaaaaaatggcattggttacacagttctga |
31701644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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