View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_46 (Length: 237)

Name: NF21239_low_46
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_46
NF21239_low_46
[»] chr7 (1 HSPs)
chr7 (1-222)||(3417133-3417354)
[»] chr5 (2 HSPs)
chr5 (1-222)||(12541037-12541261)
chr5 (93-223)||(28385781-28385911)
[»] chr2 (3 HSPs)
chr2 (92-223)||(13440646-13440777)
chr2 (14-183)||(13448728-13448900)
chr2 (92-183)||(13455280-13455371)
[»] chr6 (1 HSPs)
chr6 (92-204)||(12589787-12589899)
[»] chr4 (4 HSPs)
chr4 (99-223)||(48958600-48958724)
chr4 (98-189)||(48962746-48962837)
chr4 (92-217)||(48911950-48912075)
chr4 (151-189)||(48974614-48974652)
[»] chr8 (1 HSPs)
chr8 (98-181)||(12641122-12641205)
[»] scaffold0536 (1 HSPs)
scaffold0536 (99-170)||(6163-6234)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3417354 - 3417133
Alignment:
Q  1 cttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaatagaagatgg 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3417354 cttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggttctccaaatagaagatgg 3417255  T
Q  101 accaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattactt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3417254 accaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgataaagccattactt 3417155  T
Q  201 ttgaacactgtgtcaagcatca 222  Q
    ||||||||||||||||||||||    
T  3417154 ttgaacactgtgtcaagcatca 3417133  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12541037 - 12541261
Alignment:
Q  1 cttgttgtgagttgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaatagaaga--- 97  Q
    |||| |||||||||||||| || ||| |||| ||||| ||| |||||||||| |||||||  |||||||||||| || || || ||  |||| ||||       
T  12541037 cttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagt 12541136  T
Q  98 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccatta 197  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  ||| ||||  ||    
T  12541137 tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgta 12541236  T
Q  198 cttttgaacactgtgtcaagcatca 222  Q
    |||||||||||||||||||||||||    
T  12541237 cttttgaacactgtgtcaagcatca 12541261  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 28385781 - 28385911
Alignment:
Q  93 gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagc 192  Q
    |||| ||||||||||||||||||||||||||| | ||||||||| |||||||  | |||||||||||||||||||||||  |||||||||| |||| |||    
T  28385781 gaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttgatgatgtagc 28385880  T
Q  193 cattacttttgaacactgtgtcaagcatcat 223  Q
    |  ||||||||| ||| ||||||||||||||    
T  28385881 ctgtacttttgagcaccgtgtcaagcatcat 28385911  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 13440646 - 13440777
Alignment:
Q  92 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 191  Q
    ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||      
T  13440646 agaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagt 13440745  T
Q  192 ccattacttttgaacactgtgtcaagcatcat 223  Q
     | |||||||||| ||||||  ||||||||||    
T  13440746 gctttacttttgagcactgtcccaagcatcat 13440777  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 13448728 - 13448900
Alignment:
Q  14 gagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaata---gaagatggaccaagatgc 110  Q
    |||||||||||||| ||| ||| || || |||||||||| |||||||   ||| ||||||| |||  ||| | | ||||   |||| |||||||||||||    
T  13448728 gagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgc 13448827  T
Q  111 caagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 183  Q
    ||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| ||||||||||||    
T  13448828 caaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttga 13448900  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 13455280 - 13455371
Alignment:
Q  92 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 183  Q
    ||||| |||||||| ||||||| ||||||||||||  ||||| || |||||||| || |||||||||||||||| |||| ||||||||||||    
T  13455280 agaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga 13455371  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 12589899 - 12589787
Alignment:
Q  92 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 191  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||||||||  ||||||||| || ||||      
T  12589899 agaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagt 12589800  T
Q  192 ccattacttttga 204  Q
    |||||||||||||    
T  12589799 ccattacttttga 12589787  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 48958600 - 48958724
Alignment:
Q  99 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattac 198  Q
    ||||||||||||||| |||||||||| | | ||||||  |||||||  || |||||||| ||||||||||||||||||||||||| |||||  || ||||    
T  48958600 ggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttac 48958699  T
Q  199 ttttgaacactgtgtcaagcatcat 223  Q
    ||||||  | ||| |||||||||||    
T  48958700 ttttgaggattgtctcaagcatcat 48958724  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
Q  98 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga 189  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || |||||||| || |||||||||  |||||||||||| ||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga 48962837  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 48912075 - 48911950
Alignment:
Q  92 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 191  Q
    ||||| |||||||||||||||||| |||||||  |  |||||||| |||||||  ||| ||||||| || |||||||||   || |||||||| | ||      
T  48912075 agaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggatt 48911976  T
Q  192 ccattacttttgaacactgtgtcaag 217  Q
    || ||||||||||| ||||| |||||    
T  48911975 ccgttacttttgaaaactgtctcaag 48911950  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 48974614 - 48974652
Alignment:
Q  151 actcttctccatcaagttcaatgaagttgttgacgatga 189  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48974614 actcttctccatcaagctcagtgaagttgttgacgatga 48974652  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
Q  98 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt 181  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||  || || ||||| |||||||||||||  ||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
Q  99 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca 170  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||  ||  ||||||| || |||||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

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