View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_47 (Length: 236)
Name: NF21239_low_47
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 34864235 - 34864456
Alignment:
| Q |
8 |
tcttgggaaaattacactaacctcccctgaggtatacgtaaatgtaacttacaccccttctattttataacttagcaaatacctccc----------gtt |
97 |
Q |
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| T |
34864235 |
tcttgggaaaattacactaacctcccctgagatatacgtaaatgtaacttacaccccttctattttataacttagcaaatacctcccttatttgtttgtt |
34864334 |
T |
|
| Q |
98 |
aattggctctcaaaacccctataactaacgtccacttaactttggccaacatttgtgtttgaca--tctctatgtaaccgatatgatatacaagaggtaa |
195 |
Q |
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| T |
34864335 |
aattggctctccaaacccctataactaacgtccacttaactttggtcaacatttgtgtttgacatctctctatgtaacc-----gatatacaagaggtaa |
34864429 |
T |
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| Q |
196 |
ccaacaaaaagttccactgctgttaat |
222 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34864430 |
ccaacaaaaagttccactgctgttaat |
34864456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 43691994 - 43692060
Alignment:
| Q |
12 |
gggaaaattacactaacctcccctgaggtatacgtaaatgtaacttacaccccttctattttataac |
78 |
Q |
| |
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|||||||||||||||||||||||| | || || |||||| |||||||||||||||||||| |||| |
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| T |
43691994 |
gggaaaattacactaacctcccctaaagtttatttaaatgacacttacaccccttctattttttaac |
43692060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 52282261 - 52282289
Alignment:
| Q |
12 |
gggaaaattacactaacctcccctgaggt |
40 |
Q |
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| T |
52282261 |
gggaaaattacactaacctcccctgaggt |
52282289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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