View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_5 (Length: 567)
Name: NF21239_low_5
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Original strand, 1844703 - 1845243
Alignment:
| Q |
20 |
gttttaacgtgtgcaatattgtacatgtttgccaaatccatttttaaaaagactttagaaataaaaggtggatgtaataatcacaatcctgatttattca |
119 |
Q |
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| T |
1844703 |
gtttcaacgtgtgcaatattgtacatgtttgccaaatccatttttaaaaagactttagaaataaaaggtggatgtaataatcacaatcctgatttattca |
1844802 |
T |
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| Q |
120 |
tcttggtgttatcggtatgtgatttattcatcttggaattaggaagcatatcttaaacttgacaagtcaaaataagaagttaggctattactttaagaat |
219 |
Q |
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| T |
1844803 |
tcttggtgttatcggtatgtgatttattcatcttggaattaggaagcatatcttaaacttgacaagtcaaaataagaagttaggctattactttaagaat |
1844902 |
T |
|
| Q |
220 |
ctaccactttcacctttctgagtattattatattcataatttcatcaatcaatataaagtaatttcaaagagctattggctagatcctctacagccttac |
319 |
Q |
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| T |
1844903 |
ctaccactttcacctttctgagtattattatattcataatttcatcaatcaatataaagtaatttcaaagagctattggctagatcctctacagccttac |
1845002 |
T |
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| Q |
320 |
aactcaaatccaattaaatgtcagtcattggattaatctaatgggcttagcaattggatcaatccaaccaccaatatcagaccaatcctatccaacctgg |
419 |
Q |
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| T |
1845003 |
aactcaaatccaattaaatgtcagtcattggattaatctaatgggcttagcaattggatcaatccaaccaccaatatcagaccaatcctatccaacctgg |
1845102 |
T |
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| Q |
420 |
aggaataacatatgactcacccacaatactacacatattgaagtgaacaaaaaactatgtaaatgttttatgtaaatgttgttatagatatttctccaaa |
519 |
Q |
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| T |
1845103 |
aggaataacatatgactcacccacaatactacacatattgaagtgaacaaaaaactatgtaaatgttttatgtaaatgttgttatagatatttctccaaa |
1845202 |
T |
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| Q |
520 |
ggaatgaagatagaaaatttgcttaagaacccttcatctca |
560 |
Q |
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| T |
1845203 |
ggaatgaagatagaaaatttgcttaagaacccttcatctca |
1845243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 29819609 - 29819426
Alignment:
| Q |
77 |
gaaataaaaggtggatgtaataatcacaatcctgatttattcatcttggt-------------gttatcggtatgtgatttattcatcttggaattagga |
163 |
Q |
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| T |
29819609 |
gaaataaaagatgcatgtaataatcacaatcctgatttattcatcttggtattttgtaaatttgttatcggtatgtgatttattcatcttggaattagga |
29819510 |
T |
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| Q |
164 |
agcatatcttaaacttgacaagtcaaaataagaagttaggctattactttaagaatctaccactttcacctttctgagtattat |
247 |
Q |
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| T |
29819509 |
agcatatcttaaacttgacaagtcaaaataagaagttgggctattactttaagaatctcccactttcacctttctgagtattat |
29819426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 365 - 560
Target Start/End: Complemental strand, 29819317 - 29819127
Alignment:
| Q |
365 |
cttagcaattggatcaatccaaccaccaatatcagaccaatcctatccaacctggaggaataacatatgactcacccacaa-tactacacatattgaagt |
463 |
Q |
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|||||| ||||||||||||||||||||||| | |||||||||| ||||||| || ||||| ||||||||||||| |||||||||||||||||| |
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| T |
29819317 |
cttagccattggatcaatccaaccaccaattttagaccaatccaatccaac-------aaatacataggactcacccacaaatactacacatattgaagt |
29819225 |
T |
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| Q |
464 |
gaacaaaaaactatgtaaatgttttatgtaaatgttgt--tatagatatttctccaaaggaatgaagatagaaaatttgcttaagaacccttcatctca |
560 |
Q |
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| T |
29819224 |
gaacaaaaaactatataaatgttatatg-aagtgttgtgttatagatattactcaaaaggaatgaagatagaaaatttgcttaagaacccttcatctca |
29819127 |
T |
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