View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_50 (Length: 216)
Name: NF21239_low_50
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 47574322 - 47574376
Alignment:
| Q |
144 |
attattagaaacaaagctcctccatggcgcagcagcaacagatcgcggcacagct |
198 |
Q |
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| T |
47574322 |
attattagaaacaaagctcctccatggcgcagcagcaacagatcgcggcacagct |
47574376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 47574281 - 47574321
Alignment:
| Q |
20 |
ataactagggaataacaacaccaaatagatctctcaatagc |
60 |
Q |
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| T |
47574281 |
ataactagggaataacaacaccaaatagatctctcaatagc |
47574321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 47569410 - 47569458
Alignment:
| Q |
150 |
agaaacaaagctcctccatggcgcagcagcaacagatcgcggcacagct |
198 |
Q |
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|||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
47569410 |
agaaacaacactcctccatggcgcagcagcaacaaagcgcggcacagct |
47569458 |
T |
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