View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_6 (Length: 511)
Name: NF21239_low_6
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 2 - 411
Target Start/End: Original strand, 38881601 - 38882009
Alignment:
| Q |
2 |
gatggacatcatcaatcatcatgccatagacgcaagagcactaaagtgacaaagag-tttctggaaacagtgtctattgcgtgtatttttaatatcatgg |
100 |
Q |
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| T |
38881601 |
gatggtcatcaacattcatcatgccatagacgcaagagcactaaagttacaaagaggtttctggaaacagtgtctattgcgtgtatgtttgacatcatgg |
38881700 |
T |
|
| Q |
101 |
tgatatattatgtgaatattacgatgatttgattttatagaagctataaaatgtagtttttgnnnnnnntcacggcgtagtcacccagattctatcatac |
200 |
Q |
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| T |
38881701 |
tgatatattatgtgaatattacgatgatttgattttatagaagctataaaatgtagtttttaaaaaaaatcacggcgtagtcacccagattctatcatac |
38881800 |
T |
|
| Q |
201 |
cagccatgatatcacgcatatggtatatattactttgagtcggtttactaggctaactgaacaccgcattagaaggaagtatatgcgggtggaatatttt |
300 |
Q |
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| T |
38881801 |
cagccatgatatgacgcatatggtatatattactttgagtcggttcacttggttaactgaacaccgcattagaaggaagtatatgcgggtggaatatttt |
38881900 |
T |
|
| Q |
301 |
gtttgttgtgataagcttaaactcacatttatttcttgcatgtgtttttagttccttataaattgttgctactcccctccatctatttcgctcactcaca |
400 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| |
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| T |
38881901 |
gtttgttgtggtaagc-taaactcacatttatttcttgcatgtgtttttagttccttataaattgttgccact-ccctccatctatttcgctcactaaca |
38881998 |
T |
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| Q |
401 |
cattaacactg |
411 |
Q |
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| T |
38881999 |
cattaacactg |
38882009 |
T |
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