View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21239_low_7 (Length: 511)

Name: NF21239_low_7
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21239_low_7
NF21239_low_7
[»] chr4 (38 HSPs)
chr4 (21-341)||(37767108-37767434)
chr4 (310-487)||(37767435-37767609)
chr4 (38-135)||(36523133-36523230)
chr4 (38-136)||(38416815-38416913)
chr4 (38-135)||(29830343-29830440)
chr4 (38-135)||(44232242-44232339)
chr4 (38-136)||(35381059-35381157)
chr4 (38-136)||(43967722-43967820)
chr4 (38-135)||(2760892-2760989)
chr4 (38-135)||(26169986-26170083)
chr4 (38-135)||(54330855-54330952)
chr4 (38-135)||(55209739-55209836)
chr4 (38-138)||(47386451-47386551)
chr4 (38-135)||(17610280-17610377)
chr4 (38-135)||(25296745-25296842)
chr4 (38-135)||(35686373-35686470)
chr4 (21-136)||(38721336-38721449)
chr4 (38-106)||(55800863-55800931)
chr4 (38-137)||(38716885-38716983)
chr4 (38-105)||(50205773-50205840)
chr4 (56-138)||(55191821-55191903)
chr4 (55-128)||(5428585-5428658)
chr4 (38-135)||(27407784-27407881)
chr4 (38-135)||(39307696-39307793)
chr4 (38-98)||(3037017-3037077)
chr4 (38-98)||(45291869-45291929)
chr4 (21-135)||(31010214-31010326)
chr4 (21-113)||(2571032-2571122)
chr4 (38-98)||(4467684-4467744)
chr4 (38-98)||(12240343-12240403)
chr4 (38-106)||(12625280-12625348)
chr4 (107-139)||(40345259-40345291)
chr4 (38-129)||(34652212-34652303)
chr4 (38-132)||(17446798-17446892)
chr4 (42-128)||(25918210-25918296)
chr4 (107-135)||(4408351-4408379)
chr4 (38-126)||(30446307-30446394)
chr4 (41-137)||(50620850-50620946)
[»] chr3 (24 HSPs)
chr3 (38-136)||(20765195-20765293)
chr3 (38-136)||(39866306-39866404)
chr3 (38-136)||(42490361-42490459)
chr3 (38-135)||(13499500-13499597)
chr3 (38-136)||(27010639-27010737)
chr3 (38-135)||(42761648-42761745)
chr3 (38-136)||(27334896-27334994)
chr3 (38-136)||(34912307-34912405)
chr3 (55-137)||(45613571-45613653)
chr3 (42-135)||(19823900-19823993)
chr3 (38-135)||(44561784-44561881)
chr3 (38-136)||(33415798-33415896)
chr3 (38-135)||(21797556-21797653)
chr3 (42-138)||(21005290-21005386)
chr3 (38-136)||(36227544-36227642)
chr3 (55-136)||(43467924-43468005)
chr3 (21-136)||(15332956-15333069)
chr3 (38-94)||(30213845-30213901)
chr3 (58-106)||(33803550-33803598)
chr3 (65-136)||(32220862-32220933)
chr3 (40-135)||(54507641-54507736)
chr3 (58-132)||(42049784-42049858)
chr3 (21-81)||(44856400-44856458)
chr3 (38-113)||(25527428-25527501)
[»] chr5 (21 HSPs)
chr5 (38-136)||(8086195-8086293)
chr5 (38-136)||(33387219-33387317)
chr5 (38-135)||(978077-978174)
chr5 (38-135)||(9502792-9502889)
chr5 (38-130)||(14634322-14634414)
chr5 (38-136)||(38916415-38916513)
chr5 (38-135)||(12007797-12007894)
chr5 (38-139)||(34111958-34112059)
chr5 (59-139)||(18598540-18598620)
chr5 (38-139)||(18094246-18094347)
chr5 (38-104)||(11251145-11251211)
chr5 (37-106)||(11785890-11785959)
chr5 (38-106)||(3472442-3472510)
chr5 (21-131)||(32017217-32017325)
chr5 (38-136)||(30355039-30355136)
chr5 (38-136)||(33587634-33587732)
chr5 (38-135)||(24992303-24992400)
chr5 (21-81)||(27579580-27579638)
chr5 (38-135)||(40156198-40156295)
chr5 (38-94)||(31197855-31197911)
chr5 (38-138)||(39776627-39776727)
[»] chr1 (24 HSPs)
chr1 (38-136)||(17305953-17306051)
chr1 (38-138)||(6766369-6766469)
chr1 (38-138)||(11641232-11641332)
chr1 (38-136)||(6402575-6402673)
chr1 (38-146)||(30003522-30003630)
chr1 (38-137)||(36757651-36757750)
chr1 (38-137)||(24321257-24321358)
chr1 (38-136)||(30701717-30701815)
chr1 (38-136)||(42788707-42788805)
chr1 (38-135)||(16120605-16120702)
chr1 (38-139)||(40771937-40772038)
chr1 (38-138)||(26910073-26910173)
chr1 (38-136)||(44644520-44644618)
chr1 (38-139)||(27292636-27292737)
chr1 (21-136)||(44647863-44647976)
chr1 (21-126)||(28030831-28030934)
chr1 (38-135)||(36399098-36399195)
chr1 (38-113)||(38153442-38153517)
chr1 (42-136)||(52024025-52024119)
chr1 (38-131)||(40977653-40977746)
chr1 (21-124)||(30385295-30385396)
chr1 (38-136)||(42735330-42735431)
chr1 (76-137)||(19711891-19711952)
chr1 (58-98)||(15912521-15912561)
[»] chr2 (18 HSPs)
chr2 (21-135)||(7799847-7799959)
chr2 (38-136)||(19141231-19141329)
chr2 (38-135)||(8042187-8042284)
chr2 (38-133)||(5404998-5405093)
chr2 (38-136)||(39358145-39358243)
chr2 (38-135)||(7608049-7608146)
chr2 (38-136)||(2183122-2183220)
chr2 (38-135)||(44365157-44365254)
chr2 (38-106)||(6223095-6223163)
chr2 (55-136)||(13598441-13598521)
chr2 (38-106)||(11841758-11841826)
chr2 (38-135)||(19262680-19262777)
chr2 (38-135)||(33607377-33607473)
chr2 (46-98)||(32774628-32774680)
chr2 (22-124)||(16865065-16865165)
chr2 (108-136)||(35799429-35799457)
chr2 (107-135)||(44228679-44228707)
chr2 (42-98)||(44644907-44644963)
[»] chr8 (22 HSPs)
chr8 (38-136)||(616782-616880)
chr8 (38-136)||(623175-623273)
chr8 (38-136)||(6414130-6414228)
chr8 (38-128)||(22489439-22489529)
chr8 (38-136)||(42587413-42587511)
chr8 (38-137)||(36167074-36167173)
chr8 (38-135)||(36642023-36642121)
chr8 (38-139)||(4270257-4270358)
chr8 (38-135)||(40494384-40494481)
chr8 (38-132)||(3100660-3100754)
chr8 (38-136)||(32998449-32998547)
chr8 (38-135)||(5878317-5878413)
chr8 (38-135)||(14237280-14237377)
chr8 (38-135)||(18044425-18044522)
chr8 (38-104)||(24524131-24524197)
chr8 (38-135)||(8394346-8394443)
chr8 (42-106)||(2766217-2766281)
chr8 (42-106)||(13216890-13216954)
chr8 (40-128)||(35403523-35403611)
chr8 (38-106)||(41263839-41263907)
chr8 (38-135)||(132017-132114)
chr8 (38-128)||(38957177-38957267)
[»] chr7 (32 HSPs)
chr7 (38-136)||(28061680-28061778)
chr7 (38-135)||(36623308-36623405)
chr7 (38-135)||(40090083-40090180)
chr7 (38-135)||(47156027-47156124)
chr7 (38-136)||(38852012-38852110)
chr7 (38-136)||(41897987-41898085)
chr7 (38-135)||(8683818-8683915)
chr7 (38-135)||(32431523-32431620)
chr7 (21-135)||(36341620-36341732)
chr7 (38-135)||(42890508-42890605)
chr7 (38-135)||(48602436-48602533)
chr7 (38-129)||(40256063-40256154)
chr7 (21-135)||(42877386-42877498)
chr7 (38-136)||(16778504-16778602)
chr7 (38-135)||(20885103-20885200)
chr7 (38-135)||(46322130-46322227)
chr7 (38-106)||(30342103-30342171)
chr7 (38-106)||(44732041-44732109)
chr7 (59-137)||(35117124-35117202)
chr7 (38-135)||(7457887-7457983)
chr7 (55-136)||(25566729-25566810)
chr7 (38-135)||(39130091-39130188)
chr7 (38-106)||(11502745-11502813)
chr7 (21-139)||(4131653-4131769)
chr7 (38-81)||(46103535-46103578)
chr7 (38-128)||(42662194-42662283)
chr7 (38-135)||(36585109-36585206)
chr7 (38-135)||(49110635-49110732)
chr7 (21-136)||(6766700-6766813)
chr7 (38-138)||(7169123-7169223)
chr7 (38-106)||(7438932-7439000)
chr7 (109-137)||(42121503-42121531)
[»] chr6 (22 HSPs)
chr6 (38-137)||(19088123-19088222)
chr6 (38-136)||(32414844-32414942)
chr6 (38-135)||(6563226-6563323)
chr6 (38-135)||(24624106-24624203)
chr6 (38-136)||(4147930-4148028)
chr6 (38-136)||(17213949-17214047)
chr6 (38-138)||(18668853-18668953)
chr6 (38-136)||(32671815-32671913)
chr6 (38-135)||(22054772-22054869)
chr6 (42-135)||(25475977-25476070)
chr6 (38-106)||(20226463-20226531)
chr6 (38-106)||(22120447-22120515)
chr6 (38-138)||(29790203-29790303)
chr6 (38-105)||(1040854-1040921)
chr6 (55-106)||(3989445-3989496)
chr6 (21-127)||(31569176-31569280)
chr6 (21-134)||(4440851-4440962)
chr6 (38-136)||(17257816-17257914)
chr6 (38-137)||(15383095-15383194)
chr6 (69-136)||(20437210-20437277)
chr6 (38-113)||(28477775-28477850)
chr6 (38-113)||(29693905-29693980)
[»] scaffold0295 (2 HSPs)
scaffold0295 (42-136)||(13886-13980)
scaffold0295 (74-136)||(9371-9433)
[»] scaffold0003 (1 HSPs)
scaffold0003 (38-136)||(162002-162100)
[»] scaffold0018 (1 HSPs)
scaffold0018 (38-132)||(67934-68028)
[»] scaffold0022 (1 HSPs)
scaffold0022 (38-138)||(100812-100912)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 37767108 - 37767434
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  37767108 tcttacattctaacattt--gtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtaaatagtgcatatttcaaaattgcgacattcatttt 37767205  T
Q  121 aaaacggagggagtatatagttctctaaaatggaatttatcatgttgttgtacatcacaataaccatgtgtagtaagagtgagagtcatgcgtacataat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37767206 aaaacggagggagtatatagttctctaaaatggaatttatcatgttgttgtacatcacaataaccatgtgtagtaagagtgagagtcatgcgtacataat 37767305  T
Q  221 agctggagaaatcagtacttcaaatggacattgtatc--------atacattcattcatacatacacaatctaaatttctcgactctt-gggtgaaaatt 311  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||| |||| | ||||||| |    
T  37767306 agctggagaaatcagtacttcaaatggacattgtatcatacatttatacattcattcatacatacacaatctaaatttctcgattcttagagtgaaaa-t 37767404  T
Q  312 ttacaattttaaatgagcatcgatactcat 341  Q
    ||||||||||||||||||||||||||||||    
T  37767405 ttacaattttaaatgagcatcgatactcat 37767434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 37767435 - 37767609
Alignment:
Q  310 ttttacaattttaaatgagcatcgatactcatggactcaacaatggccttgcagcttcggaatcaccaatgatttctgagggctgtaattcaatcttctt 409  Q
    |||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37767435 ttttactattttaaatgagca-cga--ctcatggactcaacaatggccttgcagcttcggaatcaccaatgatttctgagggctctaattcaatcttctt 37767531  T
Q  410 atgtgtttctctacctttaccccatagcaccgcgtataggccacaaacaatcaacactcctcctagtatactatacac 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37767532 atgtgtttctctacctttaccccatagcaccgcgtataggccacaaacaatcaacactcctcctagtatactatacac 37767609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 36523133 - 36523230
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  ||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||  ||||| ||||||| ||||||    
T  36523133 tttgtatttatatattagttaaaaagtatagtcaaagtaagtcatgtaaatagtgcatattgcaaaaatgcgacatatattttgaaacggatggagta 36523230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 38416815 - 38416913
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  38416815 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 38416913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 29830440 - 29830343
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| ||||||||||||||    
T  29830440 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattaaaaaaattggacatgtattttgaaacggagggagta 29830343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 44232242 - 44232339
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||    
T  44232242 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattagacatgtattttgaaacggatggagta 44232339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 35381059 - 35381157
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| ||||||||||||||  | |||||||||||||  ||||||  |||||  ||||| |||||||||||||||    
T  35381059 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgtaaaaattggacatgtattttgaaacggagggagtat 35381157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 43967820 - 43967722
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||| |||||||    
T  43967820 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagttaatagtgcacattgcaaaaattgaacatgtattttgaaacggaaggagtat 43967722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 2760892 - 2760989
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||| ||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| ||||||||||||||    
T  2760892 tttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgtaaaaattggacatgtattttgaaacggagggagta 2760989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 26170083 - 26169986
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||| ||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  26170083 tttgtatttatacattagttaaaaagtatggtcaaagtaaatcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 26169986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 54330855 - 54330952
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||| ||||||| |||||||  |||||  ||||  ||||||||||||||    
T  54330855 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagcgcacattgcaaaaattggacatgtatttcgaaacggagggagta 54330952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 55209739 - 55209836
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||| ||| || |||||||||||||  ||||||  |||||  ||||| ||||||||||||||    
T  55209739 tttgtatttatatattagttaaaaagtatggtcaaagtaaatcaagtgaatagtgcacattggaaaaattggacatgtattttgaaacggagggagta 55209836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 47386451 - 47386551
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| ||||||   |||||  ||||| ||||||||||||||||    
T  47386451 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattccaaaaagtggacatgtattttgaaacggagggagtata 47386550  T
Q  138 t 138  Q
    |    
T  47386551 t 47386551  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 17610377 - 17610280
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  | |||||| ||| |||||||||||||| || ||||||||| ||| |||||||  |||||  ||||||||||||||||||||    
T  17610377 tttgtatttatacattagctaaaaaatatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtattttaaaacggagggagta 17610280  T

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Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 25296745 - 25296842
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  || ||  ||||| |||||||| |||||    
T  25296745 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattagatatgtattttgaaacggagagagta 25296842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 35686470 - 35686373
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||| | || ||||||||||||| |||||||  |||||  ||||| |||| |||||||||    
T  35686470 tttgtatttatacattagttaaaaagtatggtcaaagtaagttaagtgaatagtgcacattgcaaaaattggacatgtattttgaaactgagggagta 35686373  T

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Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 38721449 - 38721336
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||| |||  ||||| ||||||| || |||| | ||||||  |||||||||||||  |||||    
T  38721449 tcttacatgctaacattt--gtatttatatatttgttaaaaaatatgatcaaaataagtcatgtgaataatacacattgaaaaaatgcgacatgtatttt 38721352  T
Q  121 aaaacggagggagtat 136  Q
    |||| |||||||||||    
T  38721351 aaaatggagggagtat 38721336  T

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Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 55800931 - 55800863
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  55800931 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 55800863  T

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Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 38716983 - 38716885
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||  |||||  ||||| |||| |||||||||||    
T  38716983 tttgtatttatacattagttaaaaagtatggtcaaagtaagtca-attaatagtgcacattgcaaaaattggacatgtattttgaaacagagggagtata 38716885  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 50205840 - 50205773
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaa 105  Q
    |||||||||||||||  |||||||||||| ||||||||||||||  | ||||||||||||| ||||||    
T  50205840 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattacaaaaa 50205773  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 55191903 - 55191821
Alignment:
Q  56 ttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtatat 138  Q
    ||||||||||||||||||||||||||  | ||||||||||||| |||||||   ||||  ||||| ||||||||||| |||||    
T  55191903 ttaaaaagtatagtcaaagtaagtcaaatgaatagtgcacattgcaaaaattgaacatatattttgaaacggagggattatat 55191821  T

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Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 5428658 - 5428585
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    |||||||||||| ||||| |||||||| || ||||||||||||| | ||||||||||||  ||||| |||||||    
T  5428658 gttaaaaagtatggtcaacgtaagtcatgtgaatagtgcacattgccaaaatgcgacatgtattttgaaacgga 5428585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 27407784 - 27407881
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||  |||||||||||| | || |||||| |||| | |||||||||| |||  ||||| ||| ||||||||||    
T  27407784 tttgtatttatatattagttaaaaagtagggtcaaagtaagttatgtgaatagttcacactgcaaaaatgcgtcatgtattttgaaatggagggagta 27407881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 39307793 - 39307696
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||   ||||||||||||| || ||||| | | ||| ||||||||||||||  ||||| ||||||| ||||||    
T  39307793 tttgtatttatatattagttaaaaagtagcatcaaagtaagtcatgtgaatagggtatattgcaaaaatgcgacatgtattttgaaacggatggagta 39307696  T

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Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 3037077 - 3037017
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||| ||||||    
T  3037077 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcatgtgaatagtacacatt 3037017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 45291929 - 45291869
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| || |||||||||||||    
T  45291929 tttgtatttatatattagttaaaaagtatgatcaaagtaagtcaagtgaatagtgcacatt 45291869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 31010326 - 31010214
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||| ||||||  ||||||| ||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||  || ||  |||||    
T  31010326 tcttacatgctaatattttt--atttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattacaaaaattggatatgtatttt 31010229  T
Q  121 aaaacggagggagta 135  Q
     |||| |||||||||    
T  31010228 gaaaccgagggagta 31010214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 2571032 - 2571122
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacat 113  Q
    |||||||| |||||||||  ||||||||||||  |||||||| |||||||||| ||| ||| || |||| ||||||||  ||||||| |||||    
T  2571032 tcttacatgctaacattt--gtatttatatattagttaaaaaatatagtcaaaataaatcatgtgaataatgcacattataaaaatgtgacat 2571122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4467684 - 4467744
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||||||| ||  |||||||||||||||||||| |||||| || |||| ||||||||    
T  4467684 tttgtatttatacattagttaaaaagtatagtcaaagcaagtcaagtaaataatgcacatt 4467744  T

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Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 12240343 - 12240403
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | |||||||||||||    
T  12240343 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacatt 12240403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 12625348 - 12625280
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | ||||||||| ||| |||||||    
T  12625348 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcagatgaatagtgcatattgcaaaaat 12625280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 40345291 - 40345259
Alignment:
Q  107 gcgacattcattttaaaacggagggagtatata 139  Q
    |||||||||||||||||||||||||||||||||    
T  40345291 gcgacattcattttaaaacggagggagtatata 40345259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 34652212 - 34652303
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggag 129  Q
    ||||||||||||| |  |||||||| ||| ||| |||||||||  || |||||| |||||| |||||||| |||||  ||||| ||||||||    
T  34652212 tttgtatttatatgttagttaaaaaatatggtcgaagtaagtcgtgtaaatagtacacattacaaaaatgtgacatgtattttgaaacggag 34652303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 17446798 - 17446892
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggaggga 132  Q
    |||||||||||| ||  ||||||| |||| |||||||| |||||  | |||||||||||||  ||||||  |||||  ||||||||| |||||||    
T  17446798 tttgtatttatacattagttaaaatgtatggtcaaagttagtcaaatgaatagtgcacattgtaaaaattggacatatattttaaaatggaggga 17446892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 25918296 - 25918210
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    |||||||| ||  |||||||||||  |||||| ||| ||| || ||||||||||||| |||||||  |||||  |||||||||||||    
T  25918296 tatttatacattggttaaaaagtagggtcaaaataattcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaacgga 25918210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 4408351 - 4408379
Alignment:
Q  107 gcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||||||||||||||||    
T  4408351 gcgacattcattttaaaacggagggagta 4408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 30446394 - 30446307
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacg 126  Q
    |||||||||||||||  || ||||| ||  |||||||||||||| || |||| |||| ||| |||| ||||||||| |||||| |||||    
T  30446394 tttgtatttatatattagtcaaaaa-tagggtcaaagtaagtcatgtgaataatgcagattacaaacatgcgacatgcattttgaaacg 30446307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 50620850 - 50620946
Alignment:
Q  41 gtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    ||||||||| ||  ||||||| |||| |||||||||||| | || ||||||||| ||| | |||||  |||||  ||||||||||||| | ||||||    
T  50620850 gtatttatacattagttaaaatgtatggtcaaagtaagttaagtgaatagtgcatattgctaaaattggacatatattttaaaacggacgaagtata 50620946  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 20765293 - 20765195
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||  |||||||||||||||||||||    
T  20765293 tttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaacggagggagtat 20765195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 39866306 - 39866404
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  |||||||||||||||||||||    
T  39866306 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaacggagggagtat 39866404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42490361 - 42490459
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  42490361 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 42490459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 13499500 - 13499597
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  13499500 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 13499597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 27010639 - 27010737
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||| | |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  27010639 tttgtatttatatattagttaaaaagtttggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 27010737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 42761648 - 42761745
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| ||||||||||||||    
T  42761648 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgtaaaaattggacatgtattttgaaacggagggagta 42761745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 27334896 - 27334994
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||| |||||||    
T  27334896 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattgaacatgtattttgaaacggaaggagtat 27334994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 34912307 - 34912405
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||| ||||    
T  34912307 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggggtat 34912405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 45613653 - 45613571
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    ||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||||    
T  45613653 gttaaaaagtatagtcaaagtaagtcaagtaaatagtgcacattgcaaaaattggacatgaattttgaaacggatggagtata 45613571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 19823993 - 19823900
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  19823993 tatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 19823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 44561881 - 44561784
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    ||||||||||||| |  |||||||||||| |||||||||||||| || ||||||||||||| |||| |||| ||||  ||||| ||||| | ||||||    
T  44561881 tttgtatttatatgttagttaaaaagtatggtcaaagtaagtcatgtgaatagtgcacattgcaaacatgcaacatgtattttgaaacgaaaggagta 44561784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 33415896 - 33415798
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| ||||||||||||||  | ||||  ||||||| |||||||  |||||  ||||| |||| ||||||||||    
T  33415896 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaataaataacgcacattgcaaaaattggacatgtattttgaaacagagggagtat 33415798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 21797653 - 21797556
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||| ||| ||| || ||||||||||||| |||||||  |||||  ||||| |||||||| |||||    
T  21797653 tttgtatttatacattagttaaaaagtatggtcaaaataaatcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagagagta 21797556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 21005386 - 21005290
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtatat 138  Q
    |||||||||||   ||||||||||| |||||||||||| | || |||||||||| || |||||||   ||||  ||||| |||||||||||||||||    
T  21005386 tatttatatattaattaaaaagtatggtcaaagtaagtgaagtgaatagtgcacgttgcaaaaattgaacatgtattttgaaacggagggagtatat 21005290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 36227642 - 36227544
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||   || |||| ||| ||||||||||||||  | |||||||| |||| |||||||   |||| ||||||||||||||||||||||    
T  36227642 tttgtatttatacattaattgaaaaatatggtcaaagtaagtcaaatgaatagtgcgcattgcaaaaattgaacatgcattttaaaacggagggagtat 36227544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 43467924 - 43468005
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| |||||||||||||| || |||||| |||||| |||||||  | |||  ||||| |||||||| ||||||    
T  43467924 gttaaaaagtatggtcaaagtaagtcaagtgaatagtacacattgcaaaaattggtcatgtattttgaaacggagagagtat 43468005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 15332956 - 15333069
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||| | | ||||||| |||  | || |||||||||||||  |||| ||||||||  |||||    
T  15332956 tcttacatgctaacattt--gtatttatatattagttaaaaaatttggtcaaagcaagctatgtgaatagtgcacattgtaaaattgcgacatgtatttt 15333053  T
Q  121 aaaacggagggagtat 136  Q
    ||||| || |||||||    
T  15333054 aaaacagaaggagtat 15333069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 30213901 - 30213845
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgca 94  Q
    |||||||||||||||  |||||||||||| |||||| ||||||| || |||||||||    
T  30213901 tttgtatttatatattagttaaaaagtatggtcaaaataagtcaagtgaatagtgca 30213845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 33803598 - 33803550
Alignment:
Q  58 aaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    ||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  33803598 aaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 33803550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 32220933 - 32220862
Alignment:
Q  65 atagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    ||||||||||||||||| || |||||| |||||| |||||||   ||||  ||||||||||||| |||||||    
T  32220933 atagtcaaagtaagtcaagtgaatagtacacattgcaaaaattaaacatgtattttaaaacggatggagtat 32220862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 54507736 - 54507641
Alignment:
Q  40 tgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||| ||  ||||||||||||| ||||| ||||||| || ||||||||| ||| |||||||  || ||  ||||| ||||||||| ||||    
T  54507736 tgtatttatacattagttaaaaagtataatcaaaataagtcaagtgaatagtgcatattgcaaaaattggatatgtattttgaaacggaggaagta 54507641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 42049858 - 42049784
Alignment:
Q  58 aaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggaggga 132  Q
    ||||| ||||||||||||| |||| || ||| ||||||||| |||||||||| |||  |||||  ||||||||||    
T  42049858 aaaaaatatagtcaaagtatgtcatgtaaattgtgcacattgcaaaaatgcggcatgtattttggaacggaggga 42049784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 44856458 - 44856400
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtca 81  Q
    |||||||| |||||||||  |||||||||| |  ||||||||||||||| |||||||||||    
T  44856458 tcttacatactaacattt--gtatttatatgttagttaaaaagtatagttaaagtaagtca 44856400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 25527501 - 25527428
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacat 113  Q
    |||||||||||||||  |||||||| ||| ||| |||||||||| || ||||   |||||| ||||||||||||||    
T  25527501 tttgtatttatatatcagttaaaaaatatggtcgaagtaagtcatgtgaata--tcacattgcaaaaatgcgacat 25527428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 8086195 - 8086293
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  8086195 tttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 8086293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 33387317 - 33387219
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||  ||||||||| |||||||||||    
T  33387317 tttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaatggagggagtat 33387219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 978174 - 978077
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  978174 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 9502792 - 9502889
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||   ||||  ||||||||||||||||||||    
T  9502792 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgcaaaaattaaacatgtattttaaaacggagggagta 9502889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 14634322 - 14634414
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagg 130  Q
    |||||||||||||||  ||||||||||||||||||||||||||| || | ||||||||||| |||||||  |||||  ||||| |||||||||    
T  14634322 tttgtatttatatattagttaaaaagtatagtcaaagtaagtcaagtgactagtgcacattgcaaaaattggacatgtattttgaaacggagg 14634414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 38916415 - 38916513
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    ||||||||||||| |  |||||||||||| ||||||| |||||| || ||||||||| | | ||||||||||||||  ||||| |||||||||||||||    
T  38916415 tttgtatttatatgttagttaaaaagtatggtcaaagcaagtcatgtgaatagtgcatactgcaaaaatgcgacatgtattttgaaacggagggagtat 38916513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 12007797 - 12007894
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||   ||||||||||  |||||| ||||||| || ||||||||||| |  |||||||||||||  ||||| ||||||||||||||    
T  12007797 tttgtatttatatattaattaaaaagtagggtcaaattaagtcatgtaaatagtgcacaatataaaaatgcgacatgtattttgaaacggagggagta 12007894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 34112059 - 34111958
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  || ||||| |||||||||||||||||| || ||||||||||||| ||||||   |||||  ||||| |||||||| |||||||    
T  34112059 tttgtatttatagattagtaaaaaaatatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaactagacatgtattttgaaacggagagagtata 34111960  T
Q  138 ta 139  Q
    ||    
T  34111959 ta 34111958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 18598620 - 18598540
Alignment:
Q  59 aaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtatata 139  Q
    |||||||| |||||||||| ||| ||||||| |||||||| ||||||||||||||  ||||| |||| || ||||||||||    
T  18598620 aaaagtatggtcaaagtaattcatgtcaataatgcacattgcaaaaatgcgacatgtattttgaaacagatggagtatata 18598540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 18094246 - 18094347
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  ||||||||||||| | ||||||||| | || |||| |||||||| |||||||   ||||  ||||| ||||||||||||||||    
T  18094246 tttgtatttatacattagttaaaaagtataattaaagtaagttaagtgaataatgcacattgcaaaaattgaacatgtattttgaaacggagggagtata 18094345  T
Q  138 ta 139  Q
    ||    
T  18094346 ta 18094347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 11251211 - 11251145
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaa 104  Q
    |||||||||||| ||  |||||||||||| |||||| ||||||| || ||||||||||||| |||||    
T  11251211 tttgtatttatacattagttaaaaagtatggtcaaaataagtcaagtgaatagtgcacattgcaaaa 11251145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 11785890 - 11785959
Alignment:
Q  37 ttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    ||||||||||||| ||  ||||||||||||  ||||||||||||| || |||||| |||||| |||||||    
T  11785890 ttttgtatttatacattagttaaaaagtatgatcaaagtaagtcaagtgaatagtacacattgcaaaaat 11785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 3472442 - 3472510
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||  ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  3472442 tttgtatttattcattagttaaaaaatatggtcaaagtaagtcaagtaaatagtgcacattgcaaaaat 3472510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 32017325 - 32017217
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||| |||  ||||||||||| | || |||| |||||||   |||| |||| |||  |||||    
T  32017325 tcttacatgctaacattt--gtatttatatattagttaaaaaatatgatcaaagtaagttatgtgaatattgcacatcataaaattgcgtcatgtatttt 32017228  T
Q  121 aaaacggaggg 131  Q
    |||||||||||    
T  32017227 aaaacggaggg 32017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 30355039 - 30355136
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  ||||||| |||| || ||||||| ||| || ||||||||| ||| |||||||  |||||  ||||| |||| ||||||||||    
T  30355039 tttgtatttatatattagttaaaatgtatggttaaagtaaatcaagtgaatagtgcatattgcaaaaattggacatgtattttgaaac-gagggagtat 30355136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 33587634 - 33587732
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||| ||| ||||||||||||||  | |||| |||||||| |||||||  |||||  ||||| |||| || |||||||    
T  33587634 tttgtatttatagattagttaaaaaatatggtcaaagtaagtcaaatgaataatgcacattgcaaaaattggacatgtattttgaaacagatggagtat 33587732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 24992303 - 24992400
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||  | || |||||||||||||  |||| |  |||||  ||||| ||||||||||||||    
T  24992303 tttgtatttataaattagttaaaaaatatggtcaaagtaagctatgtgaatagtgcacattgtaaaactatgacatgtattttgaaacggagggagta 24992400  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27579580 - 27579638
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtca 81  Q
    |||||||| |||||||||  ||||||||||||  |||||||| |||||| |||||||||||    
T  27579580 tcttacatgctaacattt--gtatttatatattagttaaaaaatatagttaaagtaagtca 27579638  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 40156295 - 40156198
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||   ||||||| ||| || ||||||||||| || ||||||||||||| ||||| |  || ||  ||||| ||||||||||||||    
T  40156295 tttgtatttatacattaattaaaaattatggtaaaagtaagtcaagtgaatagtgcacattgcaaaagttggatatgtattttgaaacggagggagta 40156198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 31197855 - 31197911
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgca 94  Q
    ||||||||||||| |  |||||||| ||| |||||||||||| | ||||||||||||    
T  31197855 tttgtatttatattttagttaaaaattattgtcaaagtaagttaggtcaatagtgca 31197911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 39776727 - 39776627
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    ||||||||||||| |  |||||||||||  |||||| ||||| | || ||||||| ||||| ||||||| ||| ||  ||||| |||  |||||||||||    
T  39776727 tttgtatttatatgttagttaaaaagtacggtcaaaataagttatgtgaatagtgtacattgcaaaaatacgaaatgtattttgaaatcgagggagtata 39776628  T
Q  138 t 138  Q
    |    
T  39776627 t 39776627  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 17306051 - 17305953
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||   |||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||  |||||||||||||||||||||    
T  17306051 tttgtatttatatattaattaaaaagtatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaacggagggagtat 17305953  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 6766469 - 6766369
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||||||||||||    
T  6766469 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattgaacatgtattttgaaacggagggagtata 6766370  T
Q  138 t 138  Q
    |    
T  6766369 t 6766369  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 11641232 - 11641332
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||| ||||||||||||    
T  11641232 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaatggagggagtata 11641331  T
Q  138 t 138  Q
    |    
T  11641332 t 11641332  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 6402575 - 6402673
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||| ||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  6402575 tttgtatttatatattagttaaaaagtatggtcaaaataagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 6402673  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 30003630 - 30003522
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||||    
T  30003630 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattacaaaaattggacatgtattttgaaacggatggagtata 30003531  T
Q  138 tagttctct 146  Q
     | ||||||    
T  30003530 aacttctct 30003522  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 36757651 - 36757750
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||| ||| ||||||||    
T  36757651 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaatggatggagtata 36757750  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 24321358 - 24321257
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtata--gtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||||  |||||||||| ||| || ||||||||||||| ||||||| ||||||  ||||||||||||||||||||    
T  24321358 tttgtatttatacattagttaaaaattatatggtcaaagtaaatcaagtgaatagtgcacattgcaaaaattcgacatgtattttaaaacggagggagta 24321259  T
Q  136 ta 137  Q
    ||    
T  24321258 ta 24321257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 30701815 - 30701717
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  30701815 tttgtatttatacattagttaaaaattatggtcaaagtaagtcaagtgaatagtgcacattacaaaaattggacatgtattttgaaacggagggagtat 30701717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42788707 - 42788805
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||| |||||||||||    
T  42788707 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattacaaaaattggacatatattttgaaatggagggagtat 42788805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 16120605 - 16120702
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| ||||||||||||||    
T  16120605 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaacggagggagta 16120702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 40771937 - 40772038
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||||||| |||||||||| ||| || |||||||||||||  ||||||  |||||  ||||| ||||||||||||||||    
T  40771937 tttgtatttatacattagttaaaaagtatggtcaaagtaaatcaagtgaatagtgcacattgtaaaaattggacatgtattttgaaacggagggagtata 40772036  T
Q  138 ta 139  Q
    ||    
T  40772037 ta 40772038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 26910173 - 26910073
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||||||| ||||||| ||||    
T  26910173 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattatacatgtattttaaaatggagggaatata 26910074  T
Q  138 t 138  Q
    |    
T  26910073 t 26910073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 44644520 - 44644618
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||| |||  ||||||||||||| || |||| | ||||||  |||||||||||||  ||||||||| |||||||||||    
T  44644520 tttgtatttatatatttgttaaaaaatatgatcaaagtaagtcatgtgaataatacacattgaaaaaatgcgacatgtattttaaaatggagggagtat 44644618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 27292737 - 27292636
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    ||||||||||||  |  ||||||||||||||||||||||| ||| || ||||||||| ||| |||||||  |||||  ||||| |||||||||||| |||    
T  27292737 tttgtatttatactttagttaaaaagtatagtcaaagtaaatcaagtgaatagtgcagattgcaaaaattggacatatattttgaaacggagggagcata 27292638  T
Q  138 ta 139  Q
    ||    
T  27292637 ta 27292636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 44647863 - 44647976
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||| |||  ||||| ||||||| || |||| | ||||||  |||||||||||||  |||||    
T  44647863 tcttacatgctaacattt--gtatttatatatttgttaaaaaatatgatcaaaataagtcatgtgaataatacacattgaaaaaatgcgacatgtatttt 44647960  T
Q  121 aaaacggagggagtat 136  Q
    |||| |||||||||||    
T  44647961 aaaatggagggagtat 44647976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 28030831 - 28030934
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  |||||||||| |  |||||||||||| |||||| ||||||| || |||| |||||||| ||||||||| ||||  |||||    
T  28030831 tcttacatgctaacattt--gtatttatatgttagttaaaaagtatggtcaaaataagtcatgtaaataatgcacattgcaaaaatgcaacatgtatttt 28030928  T
Q  121 aaaacg 126  Q
     |||||    
T  28030929 gaaacg 28030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 36399195 - 36399098
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||| | || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||    
T  36399195 tttgtatttatacattagttaaaaattatggtcaaagtaagtgaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggatggagta 36399098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 38153442 - 38153517
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacat 113  Q
    ||||||||||||| |  |||||||||||| || | ||||||||| || |||||||||||||  |||||||||||||    
T  38153442 tttgtatttatatgttagttaaaaagtatggtaacagtaagtcatgtgaatagtgcacattataaaaatgcgacat 38153517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 52024119 - 52024025
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||| ||  |||||||| ||| |||||||||||| | || ||||||||||||| |||||||   ||||  ||||| |||||||||||||||    
T  52024119 tatttatacattagttaaaaattatggtcaaagtaagtgaagtgaatagtgcacattgcaaaaattgaacatgtattttgaaacggagggagtat 52024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 40977653 - 40977746
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggaggg 131  Q
    |||||||||||| ||  |||||||||||| |||||||| ||||| || |||||| |||||| |||||||  |||||  |||||  |||||||||    
T  40977653 tttgtatttatacattagttaaaaagtatggtcaaagttagtcaagtgaatagtacacattgcaaaaattggacatgtattttgcaacggaggg 40977746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 30385295 - 30385396
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||| ||| ||||||||||   | || |||||||||||||  |||| ||||||||  |||||    
T  30385295 tcttacatactaacattt--gtatttatatattagttaaaaaatatggtcaaagtaaactatgtgaatagtgcacattataaaattgcgacatgtatttt 30385392  T
Q  121 aaaa 124  Q
    ||||    
T  30385393 aaaa 30385396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42735330 - 42735431
Alignment:
Q  38 tttgtatttatatatacgttaaaaa---gtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagt 134  Q
    |||||||||||||||  ||||||||   |||| |||||||||||||| || ||||||||||||| ||| |||   ||||  ||||| ||||||| |||||    
T  42735330 tttgtatttatatattagttaaaaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaataattgaacatgtattttgaaacggatggagt 42735429  T
Q  135 at 136  Q
    ||    
T  42735430 at 42735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 19711891 - 19711952
Alignment:
Q  76 aagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    ||||||||| |||||||||| || ||||||||||| ||  ||||| |||| |||||||||||    
T  19711891 aagtcacgtaaatagtgcacgttgcaaaaatgcgatatgtattttgaaacagagggagtata 19711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 15912521 - 15912561
Alignment:
Q  58 aaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    ||||||||| |||||||||||||| || |||||||||||||    
T  15912521 aaaaagtatggtcaaagtaagtcaagtgaatagtgcacatt 15912561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 7799959 - 7799847
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  ||||||||||||  |||||||||||  |||||||||||||| || ||||||||||||| ||||||||||||||  |||||    
T  7799959 tcttacatgctaacattt--gtatttatatattagttaaaaagtagggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgcgacatgtatttt 7799862  T
Q  121 aaaacggagggagta 135  Q
     ||||| ||||||||    
T  7799861 gaaacgtagggagta 7799847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 19141231 - 19141329
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  19141231 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 19141329  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 8042187 - 8042284
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  8042187 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 8042284  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 5405093 - 5404998
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggag 133  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||    
T  5405093 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggag 5404998  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 39358243 - 39358145
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  39358243 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 39358145  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 7608146 - 7608049
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||    
T  7608146 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggatggagta 7608049  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 2183122 - 2183220
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||| ||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  2183122 tttgtattcatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 2183220  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 44365254 - 44365157
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||| ||| |||||||  |||||  ||||| |||||||| |||||    
T  44365254 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtattttgaaacggagagagta 44365157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 6223163 - 6223095
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||||||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  6223163 tttgtatttatatattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 6223095  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 13598521 - 13598441
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||||||||||||||  | ||||||||||| || |||||||| ||||  ||||||||||||||| |||||    
T  13598521 gttaaaaagtatggtcaaagtaagtcatatgaatagtgcaca-ttgaaaaatgcaacatatattttaaaacggaggaagtat 13598441  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 11841758 - 11841826
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||    
T  11841758 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgcaaaaat 11841826  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 19262777 - 19262680
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||| ||| |||||||||||| |  | |||||||||||||  ||||||  |||||  ||||| ||||||||| ||||    
T  19262777 tttgtatttatatattagttaaaaaatatggtcaaagtaagttaaataaatagtgcacattgaaaaaattggacatgtattttgaaacggaggaagta 19262680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 33607473 - 33607377
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  ||||||||||||| |||||||||||||  | |||||||||||||  ||||||  |||||  ||||| ||| ||||||||||    
T  33607473 tttgtatttatacattagttaaaaagtataatcaaagtaagtcaaatgaatagtgcacattgtaaaaattggacatgtattttgaaa-ggagggagta 33607377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 32774680 - 32774628
Alignment:
Q  46 tatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||  |||||||||||| |||||||||||||| || |||||||||||||    
T  32774680 tatatattagttaaaaagtatggtcaaagtaagtcaagtaaatagtgcacatt 32774628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 16865165 - 16865065
Alignment:
Q  22 cttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttta 121  Q
    ||||||| |||||||||  |||||||||| |  |||||||||||| ||||||||||||||  | |||| || | |||  |||||||||||||  ||||||    
T  16865165 cttacatgctaacattt--gtatttatatgttagttaaaaagtatcgtcaaagtaagtcatatgaatattgtatattgtaaaaatgcgacatgtatttta 16865068  T
Q  122 aaa 124  Q
    |||    
T  16865067 aaa 16865065  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 35799429 - 35799457
Alignment:
Q  108 cgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||||||||||||||||    
T  35799429 cgacattcattttaaaacggagggagtat 35799457  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 44228679 - 44228707
Alignment:
Q  107 gcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||||||||||||||||    
T  44228679 gcgacattcattttaaaacggagggagta 44228707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 44644963 - 44644907
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatt 98  Q
    |||||||||||  |||||||||||| ||||||||||| ||  | |||||||||||||    
T  44644963 tatttatatattagttaaaaagtatggtcaaagtaagacaattgaatagtgcacatt 44644907  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 616880 - 616782
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  616880 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 616782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 623273 - 623175
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  623273 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 623175  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 6414130 - 6414228
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||| ||||||||||   ||||||||||| |||||||||||||| || ||||||||||||| |||||||| |||||| ||||||||||||| |||||||    
T  6414130 tttgcatttatatattatttaaaaagtatggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgtgacatttattttaaaacggatggagtat 6414228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 22489439 - 22489529
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  ||||| ||||||||||||||    
T  22489439 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattagacatgcattttaaaacgga 22489529  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42587413 - 42587511
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  42587413 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 42587511  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 36167173 - 36167074
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  || |||||||||| ||||||||||||| || |||||| |||||| ||||||||  ||||  ||||||||||||||||||||||    
T  36167173 tttgtatttatacattagtgaaaaagtataatcaaagtaagtcaagtgaatagtacacattgcaaaaatgatacatgtattttaaaacggagggagtata 36167074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 36642023 - 36642121
Alignment:
Q  38 tttgtatttatatatacgttaaaaagta-tagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||| ||||||||||| | |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||||||||||    
T  36642023 tttgtatttatatataagttaaaaagtaatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattgaacatgtattttgaaacggagggagta 36642121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 4270257 - 4270358
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||||||||||||| ||| ||    
T  4270257 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattacaaaaattggacatgtattttaaaacggaggtagtgta 4270356  T
Q  138 ta 139  Q
    ||    
T  4270357 ta 4270358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 40494481 - 40494384
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| |||||||| |||||    
T  40494481 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattggaaaaattggacatgtattttgaaacggagagagta 40494384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 3100660 - 3100754
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggaggga 132  Q
    |||||||||||| ||  |||||||||||| |||||||||| ||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||    
T  3100660 tttgtatttatacattagttaaaaagtatggtcaaagtaaatcaagtaaatagtgcacattgcaaaaattggacatgtattttgaaacggaggga 3100754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 32998547 - 32998449
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||| ||||    
T  32998547 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggtgtat 32998449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 5878413 - 5878317
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||| |||||  ||||  ||||||||||||||    
T  5878413 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaatg-gacatgtatttggaaacggagggagta 5878317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 14237377 - 14237280
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||| ||||    
T  14237377 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggaggaagta 14237280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 18044522 - 18044425
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||    
T  18044522 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggatggagta 18044425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 24524197 - 24524131
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaa 104  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||    
T  24524197 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtaaatagtgcacattgcaaaa 24524131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 8394443 - 8394346
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||| ||||| ||  |||||||| | | |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  8394443 tttgtacttatacattagttaaaaaatttggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattagacatgtattttgaaacggagggagta 8394346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 2766217 - 2766281
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  2766217 tatttatacattagttaaaaagtatggtcaaagtaagtcaagtaaatagtgcacattgcaaaaat 2766281  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 13216890 - 13216954
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  13216890 tatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 13216954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 35403611 - 35403523
Alignment:
Q  40 tgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    |||||||||| ||  |||||||||||| ||||||||| |||| || ||||||||||||| |||||||  |||||  ||||| |||||||    
T  35403611 tgtatttatacattagttaaaaagtatggtcaaagtatgtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacgga 35403523  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 41263907 - 41263839
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  41263907 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 41263839  T

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Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 132114 - 132017
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| |||  ||||||||||||| || |||||||||| || ||||||   |||||  ||||| ||||||||||||||    
T  132114 tttgtatttatacattagttaaaaaatatgatcaaagtaagtcaagtgaatagtgcacgttgcaaaaagtggacatgtattttgaaacggagggagta 132017  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 38957267 - 38957177
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    ||||||||||||  |  |||||||| ||| |||||||||| ||| || ||||||||||||| |||||||  |||||  ||||| |||||||    
T  38957267 tttgtatttatacgttagttaaaaaatatggtcaaagtaaatcaagttaatagtgcacattgcaaaaattggacatatattttgaaacgga 38957177  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 28061680 - 28061778
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  28061680 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 28061778  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 36623405 - 36623308
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  36623405 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 36623308  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 40090083 - 40090180
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||||||||||||||||||    
T  40090083 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgaaaaaattggacatatattttaaaacggagggagta 40090180  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 47156124 - 47156027
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||    
T  47156124 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagta 47156027  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 38852012 - 38852110
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| |||||||||||||||    
T  38852012 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattggaaaaattggacatgtattttgaaacggagggagtat 38852110  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 41898085 - 41897987
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  41898085 tttgtatttatatattagttaaaaagtatgatcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 41897987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 8683915 - 8683818
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||| ||||||||||||||||  |||||  ||||||||||| | ||||||    
T  8683915 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacatttcaaaaattggacatgtattttaaaacgaatggagta 8683818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 32431523 - 32431620
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| ||||||||||||||    
T  32431523 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaatttgacatatattttgaaacggagggagta 32431620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 36341732 - 36341620
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||||||||||||| |  |||||||| |  |||||||||||| || ||| ||||||| || ||||||||||||| ||||||||||||||  |||||    
T  36341732 tcttacattctaacatttat--atttatatgttagttaaaaagtatcgttaaattaagtcatgtgaatagtgcacattgcaaaaatgcgacatgtatttt 36341635  T
Q  121 aaaacggagggagta 135  Q
     ||||| | ||||||    
T  36341634 gaaacgaatggagta 36341620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 42890508 - 42890605
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||| |||||||  | ||||||||||||| |||||||  |||||  ||||| ||||||| ||||||    
T  42890508 tttgtatttatatattagttaaaaagtatggtcaaaataagtcaaatgaatagtgcacattgcaaaaattggacatgtattttgaaacggatggagta 42890605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 48602533 - 48602436
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| ||||||||||||||  | |||||||||||||  ||||||  | |||  ||||| ||||||||||||||    
T  48602533 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattggaaaaattgggcatgtattttgaaacggagggagta 48602436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 40256154 - 40256063
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggag 129  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||| ||||||| |||||||  |||||  ||||| ||||||||    
T  40256154 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagagcacattgcaaaaattggacatgtattttgaaacggag 40256063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 42877498 - 42877386
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    ||||||||||||| ||||||  ||||||| ||  |||||||||||| |||||||||||| |  | ||||||||||||| ||||| |  |||||  |||||    
T  42877498 tcttacattctaatattttt--atttatacattagttaaaaagtatggtcaaagtaagttaaattaatagtgcacattacaaaatttggacatgtatttt 42877401  T
Q  121 aaaacggagggagta 135  Q
     ||||||||||||||    
T  42877400 gaaacggagggagta 42877386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 16778602 - 16778504
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||| ||| ||||||||||| || || ||||||||||||| ||||| |  |||||  ||||| |||||||||||||||    
T  16778602 tttgtatttatacattagttaaaaattatggtcaaagtaagccaagtgaatagtgcacattgcaaaagttggacatgtattttgaaacggagggagtat 16778504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 20885200 - 20885103
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || |||||| ||||||  ||||||  |||||  ||||| ||||||||||||||    
T  20885200 tttgtatttatacattagttaaaaaatatggtcaaagtaagtcaagtgaatagtccacattgtaaaaattggacatgtattttgaaacggagggagta 20885103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 46322130 - 46322227
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||| ||| ||  |||||||||||| |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| ||| ||||||||||    
T  46322130 tttgtattgatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaatggagggagta 46322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30342171 - 30342103
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  ||||||||||||||||||||||| ||| || |||| |||||||| |||||||    
T  30342171 tttgtatttatacattagttaaaaagtatagtcaaagtaaatcaagtgaataatgcacattgcaaaaat 30342103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 44732109 - 44732041
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  ||||||||||||  ||||||||||||| || ||||||||||||| |||||||    
T  44732109 tttgtatttatacattagttaaaaagtatgatcaaagtaagtcaagtgaatagtgcacattgcaaaaat 44732041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 35117202 - 35117124
Alignment:
Q  59 aaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||| |||||||||||||| || ||||||||| ||| |||||||   |||   ||||||||||||||||||||||    
T  35117202 aaaagtatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattgaacaggtattttaaaacggagggagtata 35117124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 7457887 - 7457983
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||| | || ||||||||||||| ||||| |  |||||  ||||| ||||||| ||||||    
T  7457887 tttgtatttatacattagttaaaaagtatggtcaaagtaagt-aagtgaatagtgcacattgcaaaacttagacatgtattttgaaacggatggagta 7457983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 25566729 - 25566810
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||| ||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| |||||||| ||||||    
T  25566729 gttagaaagtatggtcaaagtaagtcaagtgaatagtgcacattgtaaaaattggacatgtattttgaaacggagagagtat 25566810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 39130091 - 39130188
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||| ||| ||||||| |||||| || ||||||||||||| |||||||   | ||  ||||||||||||| ||||||    
T  39130091 tttgtatttatacattagttaaaaaatatggtcaaagaaagtcaagtgaatagtgcacattgcaaaaattaaagatgtattttaaaacggatggagta 39130188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 11502745 - 11502813
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  ||||||||||||  ||||||||||| | ||||||| |||||||| |||||||    
T  11502745 tttgtatttatacattagttaaaaagtatgatcaaagtaagttaagtcaataatgcacattacaaaaat 11502813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 4131653 - 4131769
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||  ||||||||||||||||  |||||||| ||| || ||||||||| | || ||||||  |||||  |||| ||||||||  |||||    
T  4131653 tcttacatgctaac--ttttgtatttatatattagttaaaaaatatggttaaagtaagttatgtgaatagtatacattgtaaaattgcgacatatatttt 4131750  T
Q  121 aaaacggagggagtatata 139  Q
     ||||||| | ||||||||    
T  4131751 gaaacggatgaagtatata 4131769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 46103535 - 46103578
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtca 81  Q
    |||||||||||||||  |||||||||||| ||||||||||||||    
T  46103535 tttgtatttatatattagttaaaaagtatggtcaaagtaagtca 46103578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 42662283 - 42662194
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacgga 128  Q
    |||||||||||||||  |||||||||||| |||||||||||  | || |||| | |||||| ||||| ||||||||  ||||| |||||||    
T  42662283 tttgtatttatatattagttaaaaagtatggtcaaagtaag-aatgtgaataatacacattgcaaaattgcgacatgtattttgaaacgga 42662194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 36585206 - 36585109
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  ||| |||||||| || ||| ||||||| || ||||||||||||| |||||||  || ||  ||||| ||||||||| ||||    
T  36585206 tttgtatttatacattagtttaaaagtatggtaaaaataagtcaagtgaatagtgcacattgcaaaaattggatatgtattttgaaacggaggaagta 36585109  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 49110635 - 49110732
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||| ||||||  |||||||| ||| |||||||||| |||  | |||||| ||||||  |||| || |||||  ||||||||||||| ||||||    
T  49110635 tttgtattaatatattagttaaaaaatatggtcaaagtaaatcatttgaatagtacacattataaaattgtgacatgtattttaaaacggatggagta 49110732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 6766700 - 6766813
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  | ||||||| ||  |||||||| ||| |||||| ||||| | || |||| |||| |||  |||| ||||||||  |||||    
T  6766700 tcttacatgctaacattt--gcatttatacattagttaaaaaatatggtcaaaataagttatgtgaataatgcagattgtaaaattgcgacatgtatttt 6766797  T
Q  121 aaaacggagggagtat 136  Q
     |||||||||||||||    
T  6766798 gaaacggagggagtat 6766813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 7169223 - 7169123
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||| |||||||||||||| ||| || ||||   |||||| ||||| |  |||||  ||||| ||||||| || |||||    
T  7169223 tttgtatttatatattagttaaaaaatatagtcaaagtaaatcatgtgaatatgacacattgcaaaattatgacatgtattttgaaacggatggtgtata 7169124  T
Q  138 t 138  Q
    |    
T  7169123 t 7169123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 7439000 - 7438932
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| |||||| ||||||| || |||| |||| ||| |||||||    
T  7439000 tttgtatttatacattagttaaaaagtatggtcaaaataagtcaagtgaataatgcatattgcaaaaat 7438932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 42121531 - 42121503
Alignment:
Q  109 gacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||||||||||||||||    
T  42121531 gacattcattttaaaacggagggagtata 42121503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 19088123 - 19088222
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||||| | |||||||||||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||||    
T  19088123 tttgtatttatatattagttaaaaagtttggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtata 19088222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 32414844 - 32414942
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || |||||||||||||  ||||||  |||||  ||||| |||||||||||||||    
T  32414844 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgaaaaaattggacatgtattttgaaacggagggagtat 32414942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 6563323 - 6563226
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||||||||||    
T  6563323 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtaaatagtgcacattgcaaaaattgaacatgtattttgaaacggagggagta 6563226  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 24624106 - 24624203
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||||||  |||||||||||| |||||||||||||| || ||||||||||||| |||||||   ||||  ||||| ||||||||||||||    
T  24624106 tttgtatttatatattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattgaacatgtattttgaaacggagggagta 24624203  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 4148028 - 4147930
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| |||||||||||||||    
T  4148028 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaacggagggagtat 4147930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 17213949 - 17214047
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||||||||||||||||||  | ||||||||||||| |||||||  |||||  ||||| ||| |||||||||||    
T  17213949 tttgtatttataaattagttaaaaagtatagtcaaagtaagtcaaatgaatagtgcacattgcaaaaattagacatgtattttgaaatggagggagtat 17214047  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 18668853 - 18668953
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||| ||| ||||||| |||||| || ||||||||||||| |||||||  |||||  ||||| ||||||||||||||||    
T  18668853 tttgtatttatacattagttaaaaaatatggtcaaagcaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtata 18668952  T
Q  138 t 138  Q
    |    
T  18668953 t 18668953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 32671913 - 32671815
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||| ||| |||||||||||| | || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  32671913 tttgtatttatacattagttaaaaattatggtcaaagtaagtgaagtgaatagtgcacattgcaaaaattggacatgtattttgaaacggagggagtat 32671815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 22054869 - 22054772
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| || ||||||||| ||| |||||||  |||||  ||||| |||||||| |||||    
T  22054869 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcatattgcaaaaattggacatgtattttgaaacggagagagta 22054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 25475977 - 25476070
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagta 135  Q
    |||||||| ||  |||||||||||  |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| ||||||||||||||    
T  25475977 tatttatacattagttaaaaagtaaggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaacggagggagta 25476070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 20226463 - 20226531
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||    
T  20226463 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgcaaaaat 20226531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 22120447 - 22120515
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | ||||||||||||| |||||||    
T  22120447 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacattgcaaaaat 22120515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 29790303 - 29790203
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||||||  |||||||| ||| ||| |||||||||| || ||||||  ||||| ||||| ||||||||  ||||| |||| || ||||||||    
T  29790303 tttgtatttatatattagttaaaaattatggtccaagtaagtcatgtgaatagtatacattgcaaaattgcgacatgtattttgaaacagatggagtata 29790204  T
Q  138 t 138  Q
    |    
T  29790203 t 29790203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 1040921 - 1040854
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaa 105  Q
    |||||||||||| ||  |||||||||||| |||||||||| ||| || ||||||||||||| ||||||    
T  1040921 tttgtatttatacattagttaaaaagtatggtcaaagtaaatcaagtgaatagtgcacattgcaaaaa 1040854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 3989445 - 3989496
Alignment:
Q  55 gttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaat 106  Q
    |||||||||||| |||||||||||||| || ||||||||||||| |||||||    
T  3989445 gttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaat 3989496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 31569176 - 31569280
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    ||||||||||||| ||||  ||||||||| ||   | |||||||||||||||||||||||| || |||| |||||||| |||||||  |||||  |||||    
T  31569176 tcttacattctaatattt--gtatttatacattaataaaaaagtatagtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtatttt 31569273  T
Q  121 aaaacgg 127  Q
     ||||||    
T  31569274 gaaacgg 31569280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 4440962 - 4440851
Alignment:
Q  21 tcttacattctaacatttttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcatttt 120  Q
    |||||||| |||||||||  |||||||||| |    |||||||||| |||||||||||| |  | ||||||||||||| ||||||||| ||||  |||||    
T  4440962 tcttacatgctaacattt--gtatttatatgttacctaaaaagtatggtcaaagtaagttatatgaatagtgcacattacaaaaatgcaacatatatttt 4440865  T
Q  121 aaaacggagggagt 134  Q
     |||||||| ||||    
T  4440864 gaaacggagagagt 4440851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 17257816 - 17257914
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    ||||||||| || ||  |||||||||||| |||||||||||||| || |||| |||||||| |||||||  |||||  ||||| |||| || |||||||    
T  17257816 tttgtatttgtacattagttaaaaagtatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattagacatgtattttgaaacagatggagtat 17257914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 15383095 - 15383194
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||||||| || |||||||||||  | |||| |||||||| |||||||  |||||  ||||| ||||||| | ||||||    
T  15383095 tttgtatttatagattagttaaaaagtatggttaaagtaagtcaaatgaataatgcacattgcaaaaattggacatgtattttgaaacggacgaagtata 15383194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 20437210 - 20437277
Alignment:
Q  69 tcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    ||||||||||||| || ||||||||||||| |||||||  |||||  |||| |||||||| |||||||    
T  20437210 tcaaagtaagtcaagtgaatagtgcacattgcaaaaattagacatgtatttgaaaacggatggagtat 20437277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 28477850 - 28477775
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacat 113  Q
    |||||||||||||||  |||||||| ||| ||||||| |||||| || |||||| |||||| ||||| || |||||    
T  28477850 tttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacat 28477775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 29693980 - 29693905
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacat 113  Q
    |||||||||||||||  |||||||| ||| ||||||| |||||| || |||||| |||||| ||||| || |||||    
T  29693980 tttgtatttatatattagttaaaaattatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacat 29693905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 13886 - 13980
Alignment:
Q  42 tatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||| ||  |||||||||||| |||||||||||||| || ||||||||||||| |||| ||  |||||  |||||||||||||||||||||    
T  13886 tatttatacattagttaaaaagtatggtcaaagtaagtcaagtgaatagtgcacattacaaatattagacatgtattttaaaacggagggagtat 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 9433 - 9371
Alignment:
Q  74 gtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  9433 gtaagtcaagtgaatagtgcacattgcaaaaattagacatgtattttgaaacggagggagtat 9371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 162002 - 162100
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtat 136  Q
    |||||||||||| ||  |||||||||||| ||||| |||||||| || ||||||||||||| |||||||  |||||  ||||| |||||||||||||||    
T  162002 tttgtatttatacattagttaaaaagtatggtcaatgtaagtcaagtgaatagtgcacattacaaaaattagacatgtattttgaaacggagggagtat 162100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 67934 - 68028
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggaggga 132  Q
    |||||||||||| ||  |||||||||||| ||||||||||||||  | |||||||||||||||||||||  |||||  ||||| ||||| |||||    
T  67934 tttgtatttatacattagttaaaaagtatggtcaaagtaagtcaaatgaatagtgcacatttcaaaaattggacatgtattttgaaacgtaggga 68028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 100812 - 100912
Alignment:
Q  38 tttgtatttatatatacgttaaaaagtatagtcaaagtaagtcacgtcaatagtgcacatttcaaaaatgcgacattcattttaaaacggagggagtata 137  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||| || ||||||||||||| ||||| |   ||||  ||||| ||||||||||||||||    
T  100812 tttgtatttatacattagttaaaaattatggtcaaagtaagtcaagtgaatagtgcacattgcaaaagttgaacatgtattttgaaacggagggagtata 100911  T
Q  138 t 138  Q
    |    
T  100912 t 100912  T

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