View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21239_low_9 (Length: 462)
Name: NF21239_low_9
Description: NF21239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21239_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 5414343 - 5414780
Alignment:
| Q |
18 |
cacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaatcattaagtgcaa |
117 |
Q |
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| T |
5414343 |
cacatgcgacttacaataatccacaaaataatcaaattacatcatatagtgaagcagttcggtttatataatggaaaccaaaaacaatcattaagtgcaa |
5414442 |
T |
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| Q |
118 |
ctaagaatgttagttattcaataaaattgaggtgttacatgnnnnnnngagaaatgttaaacttaaaacttgtgagtgaaaatatatttgagaggccaat |
217 |
Q |
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| T |
5414443 |
ctaagaatgttagttattcaataaaattgaggtgttacatgtttttttgagaaatgttaaacttaaaacttgtgagtgaaaatatatttgagaggccaat |
5414542 |
T |
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| Q |
218 |
cacagaagcatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattatcaaattcatgatataaggggggttaa----c |
313 |
Q |
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| T |
5414543 |
cacagaagtatcatatttgaattttagacattatggaaccatgacttcgagttgttgtcataatattgtcaaattcatgatataaggggggttaattaac |
5414642 |
T |
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| Q |
314 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
413 |
Q |
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| T |
5414643 |
tatatattttattccaacaaaggaattgtgttgaaatatcaaattaatgtttaagaaactatatatctactcaaactataactacttctcaaatagtttt |
5414742 |
T |
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| Q |
414 |
tctcatcaattgtttgtcaatagcagagccacattcat |
451 |
Q |
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| T |
5414743 |
tctcatcaattgtttgtcaatagcagagccacattcat |
5414780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 5398437 - 5398483
Alignment:
| Q |
184 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
230 |
Q |
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| T |
5398437 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5398483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 5406687 - 5406641
Alignment:
| Q |
184 |
aacttgtgagtgaaaatatatttgagaggccaatcacagaagcatca |
230 |
Q |
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| T |
5406687 |
aacttgtgagtgaaaatatatttgacagacccatcacaggagcatca |
5406641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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