View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123R-Insertion-1 (Length: 670)
Name: NF2123R-Insertion-1
Description: NF2123R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123R-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 670
Target Start/End: Complemental strand, 34650172 - 34649508
Alignment:
| Q |
9 |
caatcaacactcagcagtaaacaccactcagaattcgtggactctcagattttatcgttgttaattagtaacaatgggggtatcattatgcttttctggt |
108 |
Q |
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| T |
34650172 |
caatcaacactcagcagtaaacaccactcagaattcgtggactctcagattttatcgttgttaattagtaacaatgggggtatcattatgcttttctggt |
34650073 |
T |
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| Q |
109 |
tctgttatgtgttggatgggagcaatgatgcggcatttagttttgtccattatgtattttaatttggctttgtggcactaatttctttgtaaactttagt |
208 |
Q |
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| T |
34650072 |
tctgtaatgtgttggatgggagcaatgatgcggcatttagttttgtccattatgtattctaatttggctttgtggcactaatttctttgtaaactttagt |
34649973 |
T |
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| Q |
209 |
tatcttaataaaagtttgcttataaaaaacttcataataatgtatattatgcattacttannnnnnnnnnnnnggctaatattgtatagcacattttcta |
308 |
Q |
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| T |
34649972 |
tatcttaataaaagtttgcttataaaaaacttcattataatgtatattatgcattacttatttttatttttttggctaatattgtatagcacattttcta |
34649873 |
T |
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| Q |
309 |
gaaaacgttttataacatcacaaaatagatagcgcgattctgaaaaatattctctattcattcaatgcatgtttgtttgtctgtcnnnnnnnactaataa |
408 |
Q |
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| T |
34649872 |
gaaaacgttttataacatcataaaatagatagcgcgactctgaaaaatgttctctattcattcaatgcatgtttgtttgtctgtc-tcttttactaataa |
34649774 |
T |
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| Q |
409 |
agtatgtttgttgttaaacactatcaaatgagtggtaggacattcactgtannnnnnnncttcttaatcctctagtttttaaggaaataagttgtattaa |
508 |
Q |
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| T |
34649773 |
agtatgtttgttgttaaacactatcaaatgagtggtaggacattcactgtattttttttcttcttaatcctctagtttttaaggaaagaagctgtattaa |
34649674 |
T |
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| Q |
509 |
tttagagttttgcctgaatctagtagataataaatcggggtgattaggtttcgaacactaacctccatgaaagatctcttcatagacccatagctg---- |
604 |
Q |
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| T |
34649673 |
tttagagttttgcctgaatccaatagataataaatctggatgattaggtttcgaacactaacctccatgaaagatctcttcatagatccatagctgtatt |
34649574 |
T |
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| Q |
605 |
tatttatttcatatagaaaattactaaaatacttttgatacaattttattttacacaccgtctctc |
670 |
Q |
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| T |
34649573 |
tatttatttcatatagaaaattactaaaatactcttgatacaattttattttacacaccatctctc |
34649508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 669
Target Start/End: Original strand, 28467587 - 28467641
Alignment:
| Q |
615 |
atatagaaaattactaaaatacttttgatacaattttattttacacaccgtctct |
669 |
Q |
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| T |
28467587 |
atatagaaaattactaaaatactcttgatataattttattttacacgcagtctct |
28467641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Original strand, 24214058 - 24214103
Alignment:
| Q |
615 |
atatagaaaattactaaaatacttttgatacaattttattttacac |
660 |
Q |
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| T |
24214058 |
atatagaaaattattaaaatattcttgatacaattttattttacac |
24214103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 616 - 657
Target Start/End: Complemental strand, 10965250 - 10965209
Alignment:
| Q |
616 |
tatagaaaattactaaaatacttttgatacaattttatttta |
657 |
Q |
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| T |
10965250 |
tatagaaaattattaaaatactctttatacaattttatttta |
10965209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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