View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2123R-Insertion-2 (Length: 455)
Name: NF2123R-Insertion-2
Description: NF2123R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123R-Insertion-2 |
 | |
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| [»] chr1 (2 HSPs) |
| |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 1460908 - 1460465
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1460908 |
atagccatagtgacagacaaaacagttggcattgcaattggaattccacctatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
1460809 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1460808 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatacagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
1460709 |
T |
|
| Q |
212 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttcttgacagttgat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1460708 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttcttgacagttgat |
1460609 |
T |
|
| Q |
312 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1460608 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcg |
1460509 |
T |
|
| Q |
412 |
catcagctgggatgatgtctcctaacttaatgctgattatgtct |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460508 |
catcagctgggatgatgtctcctaacttaatgctgattatgtct |
1460465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 455
Target Start/End: Original strand, 1498428 - 1498871
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1498428 |
atagccatagtgacagacaaaacagttggcattgcaattggaattccaccaatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
1498527 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
211 |
Q |
| |
|
|||||||||||||||| |||| ||||| | |||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1498528 |
gtatcggatacatcactataagctcaaccaatattccaatagcgattgaacaaatgcagaagtttccaattgctgtaagcactttctgaaagtgtccaac |
1498627 |
T |
|
| Q |
212 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttcttgacagttgat |
311 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| |||||||| || || |||||||| ||| |||| ||||||||||||||||||||| || || || |
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|
| T |
1498628 |
ttgattagtactatcaaccaaatgagccgctttaccgaaaaaagtatgcacaccagtagcaataacaactgcttcaatctcacccttcttaaccgtcgaa |
1498727 |
T |
|
| Q |
312 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcg |
411 |
Q |
| |
|
|||||||||||||| | | | | |||||| |||||||||||||||||||| |||||||||||||| | ||| |||| ||| |||||||||||||||| |
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|
| T |
1498728 |
cctgaaaacacttcgtccgatgaactctttgttacaggaagtgattctcctgttaaagcagactgatctatgctcaaaggatctccctcaagaagacgcg |
1498827 |
T |
|
| Q |
412 |
catcagctgggatgatgtctcctaacttaatgctgattatgtct |
455 |
Q |
| |
|
|||||||||| | || ||||||||||| ||||||||||||||| |
|
|
| T |
1498828 |
catcagctggaacaatatctcctaacttgatgctgattatgtct |
1498871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 26788477 - 26788034
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||| |
|
|
| T |
26788477 |
atagccatagtaacagataatacagttggcattgcaattggaattccaccgatcaagagcaccaaaagattatcaattccatctctatagttgcgatgtt |
26788378 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26788377 |
gtatcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaac |
26788278 |
T |
|
| Q |
212 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttcttgacagttgat |
311 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26788277 |
ttgattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttcttgacagttgat |
26788178 |
T |
|
| Q |
312 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
26788177 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgttaaagcagactgatcaacacttaaagcatcgccctcgagaagacgag |
26788078 |
T |
|
| Q |
412 |
catcagctgggatgatgtctcctaacttaatgctgattatgtct |
455 |
Q |
| |
|
| || ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
26788077 |
cgtcggctgggatgatgtctcctaacttgatgctgataatgtct |
26788034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 448
Target Start/End: Complemental strand, 50274725 - 50274289
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
50274725 |
atagccatagtaacagacaaaacagttggcatagcaattggaattcctccaatcaatagaaccaaaagattgtcaattccgtctctatacttgcggtgtt |
50274626 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
211 |
Q |
| |
|
||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || |||| |||||||| ||||| |
|
|
| T |
50274625 |
gtatcggatacatgacaacgagttcaatcagtattccaacagcaattgagcaaatgcagaaattaccaattgctgttaggactttctgaaagtgaccaac |
50274526 |
T |
|
| Q |
212 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttcttgacagttgat |
311 |
Q |
| |
|
||| || || || |||||||||||||| ||||| || ||||| ||||| || ||||| ||| |||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
50274525 |
ttgattggtgctgtcaaccaaatgagcagctttaccaaaaaatgtgtgcactccagtagcaattacaactgcttcaatctcacctttcttaacagttgaa |
50274426 |
T |
|
| Q |
312 |
cctgaaaacacttcttgtgtggcatactttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcg |
411 |
Q |
| |
|
|| ||||||||||| | || || || |||||| | || || |||||||| || ||||||||||||||||| || |||||||| |||||||| ||||| | |
|
|
| T |
50274425 |
ccagaaaacacttcatctgagggattctttgttgccgggagagattctccagttaaagcagactgatcaacactcaaagcatcaccctcaagcagacgag |
50274326 |
T |
|
| Q |
412 |
catcagctgggatgatgtctcctaacttaatgctgat |
448 |
Q |
| |
|
||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
50274325 |
catcagcaggaatgatatctcctaatttaatgctgat |
50274289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 53076896 - 53077160
Alignment:
| Q |
8 |
accgatagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcgg |
107 |
Q |
| |
|
|||||| ||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
53076896 |
accgatggccattgttacagacaacacagtaggcatagcaatgggaattcctccgatcaaaaggaccaaaagattgtcaattccatctctgtacttgcgg |
53076995 |
T |
|
| Q |
108 |
tgttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtc |
207 |
Q |
| |
|
|| || || || ||||| || || |||||| | || ||||| ||||| |||||||||||||| ||||||||||| |||||||| | ||||| || | |
|
|
| T |
53076996 |
tgctgaattgggtacatgactatgatctcagccaacataccaactgcaatcgaacaaatgcagaagtttccaattgcagtaagcaccttctgaaaatgcc |
53077095 |
T |
|
| Q |
208 |
caacttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgca |
272 |
Q |
| |
|
|||||||||| ||||| || || | ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
53077096 |
caacttggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgca |
53077160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 53077230 - 53077269
Alignment:
| Q |
342 |
gtcacaggaagtgattctcctgtcaaagcagactgatcaa |
381 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53077230 |
gtcacaggaagtgattctccagtcaaagcagactgatcaa |
53077269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 15867629 - 15867456
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || | ||| |||||||||| |
|
|
| T |
15867629 |
atagccattgtcacagacaaaacagttggcatagcaataggaattcctccgatcaaaaggactaaaaggttgtcgattccttcacgatatttgcggtgtt |
15867530 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgct |
185 |
Q |
| |
|
| ||||||||||| || || |||||| | || ||||| ||||| |||||||| || || |||||||||||| |
|
|
| T |
15867529 |
ggatcggatacatgactatgatctcagccaacataccaactgcaatggaacaaatacaaaagtttccaattgct |
15867456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 45199046 - 45199206
Alignment:
| Q |
12 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
111 |
Q |
| |
|
|||||||| || || ||||| || || ||||||||||| ||||| || || || | ||||||||| |||||||| |||||| |||||||||||| | | |
|
|
| T |
45199046 |
atagccattgtcactgacaacactgttggcattgcaataggaatccctccaatgagaagcaccaatagattgtcaattccactcctatacttgcggcgct |
45199145 |
T |
|
| Q |
112 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaa |
172 |
Q |
| |
|
| ||||||||||| |||| |||||| |||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
45199146 |
gaatcggatacatgacaacaatctcgatgaccattcccacagcaattgagcaaatgcagaa |
45199206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 15867301 - 15867211
Alignment:
| Q |
340 |
ttgtcacaggaagtgattctcctgtcaaagcagactgatcaacgcttaaagcatcgccctcaagaagacgcgcatcagctgggatgatgtc |
430 |
Q |
| |
|
|||| ||||||||||||||||| || || || | || ||||| |||||| |||||| || |||||||| ||||||||||| |||||||| |
|
|
| T |
15867301 |
ttgttacaggaagtgattctccagttaatgctgcttggtcaaccattaaaggatcgccttctagaagacgagcatcagctggtatgatgtc |
15867211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 3153415 - 3153247
Alignment:
| Q |
15 |
gccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgta |
114 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||| ||||||||||| || | |||||| | ||||||||||||||| | ||| || | |||||| | |
|
|
| T |
3153415 |
gccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgtgttgaa |
3153316 |
T |
|
| Q |
115 |
tcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattg |
183 |
Q |
| |
|
| |||||||| ||||| ||||||| | ||||||| |||||||||||| ||||| || || ||||||| |
|
|
| T |
3153315 |
ttggatacatgacaatgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattg |
3153247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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