View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2123R-Insertion-3 (Length: 415)
Name: NF2123R-Insertion-3
Description: NF2123R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123R-Insertion-3 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 415
Target Start/End: Complemental strand, 35627428 - 35627027
Alignment:
| Q |
15 |
attaatttctttaattaaaaagtaaccaaccattttgctgtaagaaagatgctaaagacagtgtctgcatattccagattgagagttgtcctccaccacc |
114 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627428 |
attaatttcttcacgtaaaaagtaaccaaccattttgctgtaagaaagatgctaatgacagtgtctgcatattccagattgagagttgtcctccaccacc |
35627329 |
T |
|
| Q |
115 |
aaatttcaacaagtgatgtgcaatacactttgtcatgctttcaggtttgagtacaaattcattgaatattggattcaatatactttttgttcttttccaa |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627328 |
aaatttcagcaagtgatgtgcaatacactttgtcatgctttcaggtttgagtacaaattcattgaatattggattcaatatactttttgttcttttccaa |
35627229 |
T |
|
| Q |
215 |
tttaaggaatatactttagctagaatcttgaatgattttttc-ctttggtacaatgaatgttagataaatactcaatgtaatttaactttttgttaaata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35627228 |
tttaaggaatatactttagctagaatcttggatgattttttctttttggtacaatgaatgttagataaatactcaatgtaatttaactttttgttaaata |
35627129 |
T |
|
| Q |
314 |
ttgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggtgaattattggttcatcacagggggaatccgaattccatttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35627128 |
ttgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggcgaattattggttcatcacaggggaaatccgaattccatttg |
35627029 |
T |
|
| Q |
414 |
tc |
415 |
Q |
| |
|
|| |
|
|
| T |
35627028 |
tc |
35627027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 13387518 - 13387430
Alignment:
| Q |
291 |
gtaatttaactttttgttaaatattgcagcaagctgtacaaattgaaaatggcaactagtggaaaaatagcactttgctggtgaattat |
379 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||||| | ||||||| |||| ||||||| |
|
|
| T |
13387518 |
gtaatttaactttttgttgaatattgcagcaatctgtacaaagtgaaaatggcaactggtagaaaagttgcactttactggcgaattat |
13387430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University