View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2123R-Insertion-5 (Length: 285)

Name: NF2123R-Insertion-5
Description: NF2123R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2123R-Insertion-5
NF2123R-Insertion-5
[»] chr1 (3 HSPs)
chr1 (9-283)||(44128234-44128508)
chr1 (9-283)||(44132439-44132713)
chr1 (9-283)||(44140861-44141135)
[»] chr5 (9 HSPs)
chr5 (161-283)||(1504420-1504542)
chr5 (167-283)||(1491656-1491772)
chr5 (166-283)||(1477655-1477772)
chr5 (162-283)||(1481766-1481887)
chr5 (9-114)||(1504807-1504911)
chr5 (166-285)||(1485500-1485621)
chr5 (168-283)||(1496866-1496981)
chr5 (26-58)||(1482078-1482110)
chr5 (26-58)||(1477884-1477916)
[»] chr7 (11 HSPs)
chr7 (166-283)||(5290081-5290198)
chr7 (166-283)||(5302117-5302234)
chr7 (166-283)||(5309754-5309871)
chr7 (166-283)||(5283929-5284046)
chr7 (166-283)||(5314571-5314688)
chr7 (12-84)||(46707179-46707251)
chr7 (9-58)||(5310282-5310331)
chr7 (10-58)||(5284193-5284241)
chr7 (10-58)||(5314996-5315044)
chr7 (10-58)||(5289886-5289934)
chr7 (10-58)||(5302381-5302429)
[»] chr2 (2 HSPs)
chr2 (166-283)||(24165436-24165553)
chr2 (13-54)||(24163982-24164023)
[»] chr3 (3 HSPs)
chr3 (170-265)||(37863716-37863811)
chr3 (170-226)||(39029635-39029691)
chr3 (170-226)||(37859726-37859782)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 44128508 - 44128234
Alignment:
Q  9 ctctgttaggtacatacatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44128508 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44128409  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128408 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44128309  T
Q  209 gtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 283  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128308 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 44128234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 44132713 - 44132439
Alignment:
Q  9 ctctgttaggtacatacatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44132713 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44132614  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132613 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44132514  T
Q  209 gtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 283  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132513 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 44132439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 44141135 - 44140861
Alignment:
Q  9 ctctgttaggtacatacatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44141135 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44141036  T
Q  109 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141035 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44140936  T
Q  209 gtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 283  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140935 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagt 44140861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 1504542 - 1504420
Alignment:
Q  161 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttca 260  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1504542 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 1504443  T
Q  261 acacaattggctgggtttgcagt 283  Q
    |||||||| | ||| ||||||||    
T  1504442 acacaatttggtggatttgcagt 1504420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 1491772 - 1491656
Alignment:
Q  167 atacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaa 266  Q
    |||||||||||||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  267 ttggctgggtttgcagt 283  Q
    || ||||| ||||||||    
T  1491672 tttgctggatttgcagt 1491656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 1477772 - 1477655
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    ||||||||||||||||||| ||||| ||||| ||||||   ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1477772 aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacaca 1477673  T
Q  266 attggctgggtttgcagt 283  Q
     |||||||| ||||||||    
T  1477672 gttggctggatttgcagt 1477655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 1481887 - 1481766
Alignment:
Q  162 aaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaa 261  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    || |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1481887 aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaa 1481788  T
Q  262 cacaattggctgggtttgcagt 283  Q
    |||| || ||||| ||||||||    
T  1481787 cacagtttgctggatttgcagt 1481766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1504911 - 1504807
Alignment:
Q  9 ctctgttaggtacatacatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 108  Q
    |||||||||||||||  |||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  1504911 ctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattatgaagagatgatattagttcaac-aaatttgggtgatacgaaa 1504813  T
Q  109 ccaatg 114  Q
     |||||    
T  1504812 tcaatg 1504807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 1485621 - 1485500
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagta--gaaatcaggatatgtgctttgttcaaca 263  Q
    |||||||||| ||||| || ||||||||| ||||||  ||||||||||| ||||||| |||| | |||||  ||||||||||||||||||||||||||||    
T  1485621 aatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaaca 1485522  T
Q  264 caattggctgggtttgcagttc 285  Q
    ||||| | ||| ||||||||||    
T  1485521 caatttggtggatttgcagttc 1485500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 1496981 - 1496866
Alignment:
Q  168 tacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaat 267  Q
    |||| ||| ||||| |||||||||| ||| | |||||||||||||||| | ||||||| | | || |||| ||||||||||||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  268 tggctgggtttgcagt 283  Q
    | | ||| ||||||||    
T  1496881 ttgttggatttgcagt 1496866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 1482110 - 1482078
Alignment:
Q  26 atctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||||||||||||||||||||||||||||    
T  1482110 atctcctcttgatcatagatttatcacctgaag 1482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 1477916 - 1477884
Alignment:
Q  26 atctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||||||||||| ||||||||||||||||    
T  1477916 atctcctcttgatcatggatttatcacctgaag 1477884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 166 - 283
Target Start/End: Original strand, 5290081 - 5290198
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5290081 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5290180  T
Q  266 attggctgggtttgcagt 283  Q
    ||| ||||| ||||||||    
T  5290181 atttgctggatttgcagt 5290198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 5302234 - 5302117
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5302234 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5302135  T
Q  266 attggctgggtttgcagt 283  Q
    ||| ||||| ||||||||    
T  5302134 atttgctggatttgcagt 5302117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 5309871 - 5309754
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5309871 aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5309772  T
Q  266 attggctgggtttgcagt 283  Q
    ||| ||||| ||||||||    
T  5309771 atttgctggatttgcagt 5309754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 5284046 - 5283929
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  5284046 aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacaca 5283947  T
Q  266 attggctgggtttgcagt 283  Q
    ||| ||||| ||||||||    
T  5283946 atttgctggatttgcagt 5283929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 5314688 - 5314571
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||||||| || ||||||||||||||||||   ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  5314688 aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5314589  T
Q  266 attggctgggtttgcagt 283  Q
    ||| ||||| ||||||||    
T  5314588 atttgctggatttgcagt 5314571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 46707179 - 46707251
Alignment:
Q  12 tgttaggtacatacatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagtt 84  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  46707179 tgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaattatgataggatgatattagtt 46707251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5310331 - 5310282
Alignment:
Q  9 ctctgttaggtacatacatctcctcttgatcatagatttatcacctgaag 58  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  5310331 ctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5284241 - 5284193
Alignment:
Q  10 tctgttaggtacatacatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||    
T  5284241 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5315044 - 5314996
Alignment:
Q  10 tctgttaggtacatacatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||    
T  5315044 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5314996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 5289886 - 5289934
Alignment:
Q  10 tctgttaggtacatacatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| |||||  |||||||||||||||| ||||||||||||||||    
T  5289886 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 5302429 - 5302381
Alignment:
Q  10 tctgttaggtacatacatctcctcttgatcatagatttatcacctgaag 58  Q
    |||||||| |||||  |||||||||||||||| ||||||||||||||||    
T  5302429 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 166 - 283
Target Start/End: Original strand, 24165436 - 24165553
Alignment:
Q  166 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||| |||||||| ||||| ||||||||||   |||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  266 attggctgggtttgcagt 283  Q
     || | ||| ||||||||    
T  24165536 gtttggtggatttgcagt 24165553  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24163982 - 24164023
Alignment:
Q  13 gttaggtacatacatctcctcttgatcatagatttatcacct 54  Q
    |||||||||||  |||||||||||||||||| ||||||||||    
T  24163982 gttaggtacatgtatctcctcttgatcatagttttatcacct 24164023  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 37863716 - 37863811
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 265  Q
    |||||||||||| |||||||| ||| |||||||||| ||||| ||||| ||||||||    ||||| || ||||||||||| || || ||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca 37863811  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgat 226  Q
    |||||||||||| || ||||| ||||| || || |||||||||||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  170 cttacacatgcgttggaatttctctttgagttcagtcttgtgctcactatttgtgat 226  Q
    |||||||||||| || ||||| |||||||| |||||||| || ||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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