View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123R-Insertion-6 (Length: 219)
Name: NF2123R-Insertion-6
Description: NF2123R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123R-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 11825372 - 11825582
Alignment:
| Q |
9 |
gttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaatacgtttgtaaaactcaagcctacccaattcatatatttagttctg |
108 |
Q |
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| T |
11825372 |
gttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaacacgtttgtaaaactcaagcctaccgaattcatatatttagttctg |
11825471 |
T |
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| Q |
109 |
gaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaaacccaacttcaaaacc |
208 |
Q |
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| T |
11825472 |
gaaccattccgttgacttagactcgcaatttaacttattccgcaaaatacgcgccaaaacccgtaagcatttttccagcagaaaacccaacttcaaaagc |
11825571 |
T |
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| Q |
209 |
actttctgagt |
219 |
Q |
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| T |
11825572 |
actttccgagt |
11825582 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 14175701 - 14175611
Alignment:
| Q |
102 |
agttctggaaccattccgttgacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaa |
192 |
Q |
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| T |
14175701 |
agttctggagccattccatcaactaaaactcacagtatagcttattccgcaaaatctacatcaaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
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