View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123_high_2 (Length: 291)
Name: NF2123_high_2
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 49256172 - 49256435
Alignment:
| Q |
12 |
atcatctcaacactatatacaataccagaagcaactggctcagcagcaaggttttgattcacatcattcaaaacccattcaatttgtgcatacacatttt |
111 |
Q |
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| T |
49256172 |
atcatctcaacactctatacaataccagaagcaactggctcagcagcaaggttttgattcacatcattcaaaacccattcaatttgtgcatacacatttt |
49256271 |
T |
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| Q |
112 |
tctgtacaaataaaaagtgatgctatttctttgtttgtgtttggtttttcttttcgttgtgttattcagtgcaagagtttcaaatgcattaggagctgga |
211 |
Q |
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| T |
49256272 |
tctgtacaaataaaaagtgatgctatttctttgtttgtgtttggtttttcttttcgttgtgtcattcagtgcaagagtttcaaatgcattaggagctgga |
49256371 |
T |
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| Q |
212 |
tgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggctatat |
275 |
Q |
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| T |
49256372 |
tgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggctatat |
49256435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 49269155 - 49269218
Alignment:
| Q |
12 |
atcatctcaacactatatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
75 |
Q |
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| T |
49269155 |
atcatctcaacaatctatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
49269218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 49269303 - 49269391
Alignment:
| Q |
185 |
agagtttcaaatgcattaggagctggatgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggctat |
273 |
Q |
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| T |
49269303 |
agagtttcaaatgcattaggaggtggatgtccacaagcagcgcgattgtctgtctttgcttctatgaccgttgcagtttctgaggctat |
49269391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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