View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123_high_3 (Length: 259)
Name: NF2123_high_3
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 34649508 - 34649753
Alignment:
| Q |
14 |
gagagacggtgtgtaaaataaaattgtatcaaaagtattttagtaattttctatatgaaataaataaatacagctatgggtctatgaagagatctttcat |
113 |
Q |
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| T |
34649508 |
gagagatggtgtgtaaaataaaattgtatcaagagtattttagtaattttctatatgaaataaataaatacagctatggatctatgaagagatctttcat |
34649607 |
T |
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| Q |
114 |
ggaggttagtgttcgaaacctaatcaccccgatttattatctactagattcaggcaaaactctaaattaatacaacttatttccttaaaaactagaggat |
213 |
Q |
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| T |
34649608 |
ggaggttagtgttcgaaacctaatcatccagatttattatctattggattcaggcaaaactctaaattaatacagcttctttccttaaaaactagaggat |
34649707 |
T |
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| Q |
214 |
taagaagnnnnnnnntacagtgaatgtcctaccactcattcgatag |
259 |
Q |
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| T |
34649708 |
taagaagaaaaaaaatacagtgaatgtcctaccactcatttgatag |
34649753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 28467641 - 28467587
Alignment:
| Q |
15 |
agagacggtgtgtaaaataaaattgtatcaaaagtattttagtaattttctatat |
69 |
Q |
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| T |
28467641 |
agagactgcgtgtaaaataaaattatatcaagagtattttagtaattttctatat |
28467587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 24214103 - 24214058
Alignment:
| Q |
24 |
gtgtaaaataaaattgtatcaaaagtattttagtaattttctatat |
69 |
Q |
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| T |
24214103 |
gtgtaaaataaaattgtatcaagaatattttaataattttctatat |
24214058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 10965209 - 10965250
Alignment:
| Q |
27 |
taaaataaaattgtatcaaaagtattttagtaattttctata |
68 |
Q |
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| T |
10965209 |
taaaataaaattgtataaagagtattttaataattttctata |
10965250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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