View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123_high_4 (Length: 246)
Name: NF2123_high_4
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34240410 - 34240631
Alignment:
| Q |
1 |
ttaacaaatcataaatccattcacaataccctaaaatatctatacatgaatatcttcttctttatatattttgtattaccacacacctaaaatatataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240410 |
ttaacaaatcataaatccattcacaataccctaaaatatctatacatgaatatcttcttctttatatattttgtattaccacacacctaaaatatataag |
34240509 |
T |
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| Q |
101 |
ttattcaaattagcttacggtgtatcgtaaatatttattccatttcactccactgcaaatatatgaaaatattttttacctcnnnnnnngaaaatatttt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
34240510 |
ttattcaatttagcttacggtgtatcgtaaatatttattccatttcactccaccgcaaatatatgaaaatattttttacctcaaaaaaagaaaatatttt |
34240609 |
T |
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| Q |
201 |
tcttagttcatttgactaaaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34240610 |
tcttagttcatttgactaaaaa |
34240631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34249927 - 34250043
Alignment:
| Q |
1 |
ttaacaaatcataaatccattcacaataccctaaaatatctatacatgaatatcttcttctttatat-attttgtattaccacacacctaaaatatataa |
99 |
Q |
| |
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||||||||| | || |||||||||||||||| ||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
34249927 |
ttaacaaatgacaagtccattcacaatacccaaaaatatctatgcatgaatttcttcttctttaaattattttgtattaccacacacctaaaatatataa |
34250026 |
T |
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| Q |
100 |
gttattcaaattagctt |
116 |
Q |
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|||||||||||| |||| |
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| T |
34250027 |
gttattcaaattggctt |
34250043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 34250790 - 34250838
Alignment:
| Q |
129 |
aaatatttattccatttcactccactgcaaatatatgaaaatatttttt |
177 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
34250790 |
aaatatttattcaatttcactccaccgcaaatatatgaaaatatttttt |
34250838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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