View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2123_low_1 (Length: 628)
Name: NF2123_low_1
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 24136572 - 24137182
Alignment:
| Q |
1 |
gggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24136572 |
gggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccagcacatgtgc |
24136671 |
T |
|
| Q |
101 |
ttaaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24136672 |
ttaaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttagcctaa |
24136771 |
T |
|
| Q |
201 |
cccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24136772 |
ccagcaataattgcttcccaagatgcacaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttga |
24136871 |
T |
|
| Q |
301 |
tcatggtttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccagtttcttgttttgcacatatcatgcaatcatcaca |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
24136872 |
tcatggtttccaggaacctacattctgacaaggcattacctcatacaattccctt-ccatatccattttcttgttttgcacatatcatgcaatcatcaca |
24136970 |
T |
|
| Q |
401 |
ttgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttcacg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24136971 |
ttgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgtccacg |
24137070 |
T |
|
| Q |
501 |
tgaaaacaccccgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatccgggccataaccgaaaatcatggtattccaagaaattac |
600 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
24137071 |
tgaaaacaccctgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatctgggccataaccgaaaattatggtattccaagaaattac |
24137170 |
T |
|
| Q |
601 |
atccctaacaag |
612 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24137171 |
atccctaacaag |
24137182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 24134258 - 24134871
Alignment:
| Q |
1 |
gggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| | | |||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
24134258 |
gggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccataccagcacatgtgc |
24134357 |
T |
|
| Q |
101 |
ttaaagca-aacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttacccta |
199 |
Q |
| |
|
| ||| | ||||||| ||| ||||| |||| ||| | | |||||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| |
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|
| T |
24134358 |
tcaaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgaccagtctgagccta |
24134457 |
T |
|
| Q |
200 |
acccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttg |
299 |
Q |
| |
|
||| |||||||||| |||||||| | |||||||| | ||||||||||||||||||||| | | |||||||||||| | | |||||| ||||||||||| |
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|
| T |
24134458 |
accaccaataattgccacccaagatacacaatcgcggttagccatcatgtcaaacaatttgccaacttgagcaatatttcctttctgatcatagccgttg |
24134557 |
T |
|
| Q |
300 |
atcatggt-ttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccagtttcttgttttgcacatatcatgcaatcatca |
398 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||| || ||||| |||||||| || || ||||| |
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|
| T |
24134558 |
atcatggtattccacgaacctacattccaacatggcattgcctcaaacaattcccttgccatatccatttgcttgtattgcacatttcccttaaccatca |
24134657 |
T |
|
| Q |
399 |
cattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttca |
498 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| ||||||||| || |
|
|
| T |
24134658 |
cattgtatgtcatctttcattttcccggcatttcatcgaaaactcttctcgcatgatccaacattccactctgcacatatgcaaacatcattgttgtcca |
24134757 |
T |
|
| Q |
499 |
cgtgaaaacaccccgcaccggagactcctcaaacaatctcccagctagaaacaaatctccatccgggccataaccgaaaatcatggtattccaagaaatt |
598 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| |||| | ||||||| ||||| ||| |||| |||||||||| |||||||||||||||| |
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|
| T |
24134758 |
cctgaaaacatcccgcaccggagactcctcaaacaatctcctagcttgtaacaaatatccattcggtgcatatccgaaaatcagggtattccaagaaatt |
24134857 |
T |
|
| Q |
599 |
acatccctaacaag |
612 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24134858 |
acatccctaacaag |
24134871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 57 - 192
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
57 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
155 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
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|
| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
156 |
accagcatgtccatagcttattcatagtgaccagtct |
192 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 37 - 610
Target Start/End: Complemental strand, 45149295 - 45148720
Alignment:
| Q |
37 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
135 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
|
|
| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
136 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
235 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
|
| Q |
236 |
ttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggc |
334 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45149095 |
ctgagtcatcatgtcaaacaattccctagcttgagcaatatctccgttctgaccatagccgctgataatggtattccatgaacctacattccgacaaggc |
45148996 |
T |
|
| Q |
335 |
attgcctcatacaattcccttgccatatccagtttcttgttttgcacatatcatgcaatcatcacattgtatgtcatctttctttttcccggcatttcat |
434 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
45148995 |
attgcctcaaacaattcccttgccatatccattttcttgtattgcacatatcctgcaatcatcacattgtatgccatctctctttttcccggcatttcat |
45148896 |
T |
|
| Q |
435 |
cgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttcacgtgaaaacaccccgcaccggagactcctcaaacaa |
534 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45148895 |
cgaaaactcttctcgcttcatccaacattccactctgcacatatgcaaacaccattgctgtccacgtgaaaacatcccgcaccggagactcctcaaacaa |
45148796 |
T |
|
| Q |
535 |
tctcccagctagaaacaaatctccatccgggccataaccgaaaatcatggtattccaagaaattacatccctaaca |
610 |
Q |
| |
|
|||| ||| | ||||||||||||||| || |||||||| ||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
45148795 |
cctcctggcttgtaacaaatctccatcccgggcataaccggaaatcatggtattccaagagattgcattcctaaca |
45148720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 38 - 407
Target Start/End: Complemental strand, 45165655 - 45165284
Alignment:
| Q |
38 |
tcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaattttt |
136 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||| ||| |||||||||| ||| || |||||||||| |||||| ||| || |||| ||||||||| ||| |
|
|
| T |
45165655 |
tcttcaccgcctgcccatgaatttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc |
45165556 |
T |
|
| Q |
137 |
gtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgt |
236 |
Q |
| |
|
|||| ||| |||| || | ||||| || ||||| |||||||||||| ||| | | ||||| |||||||| || |||||||| | || || || |
|
|
| T |
45165555 |
tccgtcttgttttatctctacaaacatgttcagagcttcttcatagtgaccgctctgagcataaccagcaataatagccgcccaagatacacagtcacgc |
45165456 |
T |
|
| Q |
237 |
tgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggca |
335 |
Q |
| |
|
|| | |||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||||| | |||||||| ||||| |||| || ||||||||| |||| |
|
|
| T |
45165455 |
tgtggcatcatatcaaagaattttctagcctgagcaatgtctccaatctgaccatagcctgtaatcatggtattccatgaacttatattccgacagggca |
45165356 |
T |
|
| Q |
336 |
ttgcctcatacaattcccttgccatatccagtttcttgttttgcacatatcatgcaatcatcacattgtatg |
407 |
Q |
| |
|
| | |||| |||| |||||||| || |||| |||||| |||||||||| | |||||||| ||||||||| |
|
|
| T |
45165355 |
tagactcaaacaactcccttgcgatgtccattttcttagtttgcacataacccgcaatcattgcattgtatg |
45165284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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