View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2123_low_2 (Length: 575)
Name: NF2123_low_2
Description: NF2123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2123_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 2746978 - 2747238
Alignment:
| Q |
18 |
gtttggagttggttattagggtcggaatcaggtttggagttagggtcgggtgagtctggtaatatggaacggaatgagttgttgttattgttgttggttt |
117 |
Q |
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| T |
2746978 |
gtttggagttggttattagggtcggaatcaggtttggagttagggtcgggtgagtctggtaatatggaacggaatgagttgttattattgttgttggttt |
2747077 |
T |
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| Q |
118 |
ggtctgtgaaatgttggattggtaactcttgtgaaagatgttggttttggtaagccataaaacttaacaaaagaaacaaaacaagtg----tgtctgtgt |
213 |
Q |
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| T |
2747078 |
ggtctgtgaaatgttggattggtaactcttgtgaaagatgttggttttggtaagccataaaacttaacaaaagaaacaaaacaagtgtgtatgtttgtgt |
2747177 |
T |
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| Q |
214 |
gttagagaacaaggtactaggtagctattatagtgttgaattgaaggatgtttcagagatatgaag |
279 |
Q |
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| T |
2747178 |
gttagagaacagggtactaggtagctattatagtg-----ttgaaggatgtttgagagatatgaag |
2747238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 2747486 - 2747534
Alignment:
| Q |
521 |
cgttgttgtgatcggaaaataaatccaaacaaagtatgtgtgatgatgt |
569 |
Q |
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| T |
2747486 |
cgttgctgtgatcggaaaataaatccaaacaaagtatgtgtgatgatgt |
2747534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 2747314 - 2747354
Alignment:
| Q |
360 |
attgtgggactaggaaatgaagataaaatattgagggggtg |
400 |
Q |
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| T |
2747314 |
attgtgggactaggaaatgaagataaaatattgagggggtg |
2747354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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