View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21240_high_10 (Length: 311)
Name: NF21240_high_10
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_high_10 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 55743513 - 55743359
Alignment:
| Q |
1 |
ttaagttatttgaaacgattatgaaactaatcttaatctgattcttt---agatagcagtttaaaacccttcgtctctccccaataatatattatcctga |
97 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||| |||||||||| | ||||| ||||||||| || |||||||||||||| |||||||||| | |
|
|
| T |
55743513 |
ttaagttatttggaccaattatgaaactaatcttactctgattcttcttcatgtagcaatttaaaaccatttgtctctccccaata-tatattatccggg |
55743415 |
T |
|
| Q |
98 |
gatttgtggagtttgattctcaatgtaaagttttatttttggaaaacaattaagtta |
154 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55743414 |
gatttgttgagtctgattctcaatgtaaagtttta-ttttggaaaacaattaagtta |
55743359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 40719 - 40775
Alignment:
| Q |
221 |
ggggctgctaatttacacc-acctaaaaacactaaagtacgagttagcaatctacac |
276 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
40719 |
ggggctgctaacttacacctacctaaaaacactaaggtacaagttagcaagctacac |
40775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 9158903 - 9158851
Alignment:
| Q |
223 |
ggctgctaatttacaccacctaaaaacactaaagtacgagttagcaatctaca |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
9158903 |
ggctgctaatttacaccacctaaaaacactaaggggtaagttagcaatctaca |
9158851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 32151835 - 32151777
Alignment:
| Q |
219 |
ttggggctgctaatttacacc-acctaaaaacactaaagtacgagttagcaatctacac |
276 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| || | ||||||||| |||||| |
|
|
| T |
32151835 |
ttggggctgctaacttacacccacctaaaaacactaaggtgcaagttagcaagctacac |
32151777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 508812 - 508775
Alignment:
| Q |
238 |
ccacctaaaaacactaaagtacgagttagcaatctaca |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
508812 |
ccacctaaaaacactaaagtacaagttagcaaactaca |
508775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 27787779 - 27787750
Alignment:
| Q |
222 |
gggctgctaatttacaccacctaaaaacac |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27787779 |
gggctgctaatttacaccacctaaaaacac |
27787750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 42371130 - 42371078
Alignment:
| Q |
224 |
gctgctaatttacaccacctaaaaacactaaagtacgagttagcaatctacac |
276 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || | ||||||||| |||||| |
|
|
| T |
42371130 |
gctgctaacttacaccacctaaaaatactaaggtgcaagttagcaagctacac |
42371078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University