View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21240_high_11 (Length: 278)
Name: NF21240_high_11
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 6874315 - 6874198
Alignment:
| Q |
158 |
tcacctaaaatttaagtggacaataattaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaactt |
257 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || || |
|
|
| T |
6874315 |
tcacctaaaatttgagtggaccataattaaaagccattagatgaagaaacttatgagatggtatcatgtggtagccacactggatcgaacccaacaattt |
6874216 |
T |
|
| Q |
258 |
cattctttcttctctctc |
275 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
6874215 |
cattctttcttcactctc |
6874198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 36792682 - 36792607
Alignment:
| Q |
198 |
atgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcattctttcttctctc |
273 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36792682 |
atgaagaaatttatgagatggtatcatgtggcagccacactagattgaatccaaaaacttcattctttcttctctc |
36792607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 36792722 - 36792681
Alignment:
| Q |
7 |
tttattacaatgtaaaattgttctattatgtgaaagagaaat |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36792722 |
tttattacaatgtaaaattgttctattatgtgaaagagaaat |
36792681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 49933384 - 49933315
Alignment:
| Q |
158 |
tcacctaaaatttaagtggacaataattaaaagtcattagatgaagaaacttatgagatggtatcatgtg |
227 |
Q |
| |
|
||||||||||| | |||||| || |||||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
49933384 |
tcacctaaaatatgggtggaccatcattaaaagctattagatgaaagaacttatgagattgtatcatgtg |
49933315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 5346280 - 5346190
Alignment:
| Q |
174 |
tggacaataattaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcattctt |
264 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||| || ||| ||||| |
|
|
| T |
5346280 |
tggaccatcattaaaagtcattagatgaaggaacttatgagattgtatcatgtgttagccacactagattggacccaacaaattctttctt |
5346190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 41191608 - 41191699
Alignment:
| Q |
183 |
attaaaagtcattagatgaagaaacttatgagatggtatcatgtggcagccacactagattgaacccaaaaacttcattctttcttctctctc |
275 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||| | |||||| |||| | |||||| ||||||||| |||||||||||| |
|
|
| T |
41191608 |
attaaaagccattagatgaaggaacttataagatggtatcatgtggtatccacaccagatcggacccaacaacttcatt-attcttctctctc |
41191699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 2678126 - 2678094
Alignment:
| Q |
125 |
aataatttttatgataattttctctttcatact |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2678126 |
aataatttttatgataattttctctttcatact |
2678094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 53681140 - 53681172
Alignment:
| Q |
125 |
aataatttttatgataattttctctttcatact |
157 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
53681140 |
aataatttttgtgataattttctctttcatact |
53681172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University