View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_high_4 (Length: 443)
Name: NF21240_high_4
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 29280003 - 29280414
Alignment:
| Q |
17 |
agaaggggggcgagaacttattttctat-aaaacatttcnnnnnnnntaataatcaagtgtgtgataaaatgttacatgatcatctataaaattattatt |
115 |
Q |
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| T |
29280003 |
agaaggggggtgagaacttattttctattaaaacatttcaaaaaaa-taataatcaagtgtt--ataaaatgttacatgatcatctataaaattattatt |
29280099 |
T |
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| Q |
116 |
tttatgttttatnnnnnnnnnntctcaagtataa-tcaaaatataaacttaatcctctatatattccctaacaaatgctagtgcaagaaattatgtatgt |
214 |
Q |
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| T |
29280100 |
tttatgttttataaaaaaaaa-tctcaagtataaatcaaaatataaacttagtcctctatatattccctaacaaatgctagtgcaagaaattatgtatgt |
29280198 |
T |
|
| Q |
215 |
gctagggcaagaactaggcataaaatgatgtatgtgttggtgcaagaactatagttagtagcatagtatcaatatcatatgcatgaaagatgttaatgaa |
314 |
Q |
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| T |
29280199 |
gttagggcaagaactaggcataaaatggtgtatgtgttagtccaagaactatagttagtagcatagtatcaatatcatatgcatgaaagatgttaatgaa |
29280298 |
T |
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| Q |
315 |
agaacaagagattatagttatgatgaagtcaccatttcatcagaaaactctttggaaatcacagtgagcaatgtaattcctgcatgtcgcattttccagt |
414 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280299 |
agaacaagagattatagctatgatgaagtcaccatttcatcagaaaactctttggaaatcacagtgagcaatgtaattcctgcatgtcgcattttccagt |
29280398 |
T |
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| Q |
415 |
cagctgaatccaagta |
430 |
Q |
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| T |
29280399 |
cagctgaatccaagta |
29280414 |
T |
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