View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_high_7 (Length: 340)
Name: NF21240_high_7
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 31766104 - 31766411
Alignment:
| Q |
20 |
aagagattgaagaacaaagagttgcaacagaagcacttctttcaaagatttttgctagcatttcaacggttaaaggagcatatgctgaactgcaacattt |
119 |
Q |
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| T |
31766104 |
aagagattgaagaacaaagagttgcaacagaagcacttctttcaaagatttttgctagcatttcaacggttaaaggagcatatgctgaactgcaacattt |
31766203 |
T |
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| Q |
120 |
tcagacaccttttgaccctgatggaattgaagcttctgataagttactagtttctgagttgaagcatttatctgagctaaaacaatgttacttgaagaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31766204 |
tcagacaccttttgaccctgatggaattgaagcttctgataagttactagtttctgagttgaagcatttatctgagctaaaacaatgttacttgaagaaa |
31766303 |
T |
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| Q |
220 |
caatttgatccttcaccagagaaagcgatactcgcagctgaatctaaggagattaagggtgtcataaaaacctacgagattaccgcaaagaaattggaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31766304 |
caatttgatccttcaccagagaaagcgatactcgcagctgaatctaaggagattaagggtgtcataaaaacctacgagattaccgcaaagaaattggaat |
31766403 |
T |
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| Q |
320 |
cacaggtt |
327 |
Q |
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|||||||| |
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| T |
31766404 |
cacaggtt |
31766411 |
T |
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