View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_high_8 (Length: 330)
Name: NF21240_high_8
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_high_8 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 52142338 - 52142045
Alignment:
| Q |
17 |
acctttcaataaaatggcttcttcctccacgaaagtgtccatgaagattcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatct |
116 |
Q |
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| T |
52142338 |
acctttcaataacatggcttcttcttccaccaaagtctccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagct |
52142239 |
T |
|
| Q |
117 |
gtggttgacttccttttcaacttgctgtgcttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatg |
216 |
Q |
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| T |
52142238 |
gtcgtagactttcttttcaacttgctatgtttgccaatcggcactgttgtgaagctgctaagcgctaatggcatggttggtagcttagggaatctgtatg |
52142139 |
T |
|
| Q |
217 |
agagtgttgaaaacctcaaccagaattacatgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaat |
310 |
Q |
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| T |
52142138 |
agagtgttgaaaacctcaaccagaattacatgctaccagatcaaactaaggatgtactcttaaacccaagagctcaaagctcgtcaactgaaat |
52142045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 52145839 - 52145560
Alignment:
| Q |
34 |
cttcttcctccacgaaagtgtccatgaagattcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttcctttt |
133 |
Q |
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||||||| |||| |||||||| ||||| ||||||| || ||||||||| |||||||||| ||||||||||||||||||||||| | ||||| || || |
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| T |
52145839 |
cttcttctaccaccaaagtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatctgtaatagactttctgtt |
52145740 |
T |
|
| Q |
134 |
caacttgctgtgcttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctc |
233 |
Q |
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| T |
52145739 |
caatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtagtttaggaaatctgtatcagagtgttgaaaacctc |
52145640 |
T |
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| Q |
234 |
aaccagaattacatgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaatctc |
313 |
Q |
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| T |
52145639 |
aaccaaaattgcatgcaaccatttcaaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatctc |
52145560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 311
Target Start/End: Original strand, 17522262 - 17522543
Alignment:
| Q |
30 |
atggcttcttcctccacgaaagtgtccatgaagattcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttcc |
129 |
Q |
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||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |
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| T |
17522262 |
atggcttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttc |
17522361 |
T |
|
| Q |
130 |
ttttcaacttgctgtgcttgccaatcggtactgttgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaa |
229 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17522362 |
ttttcaacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaaa |
17522461 |
T |
|
| Q |
230 |
cctcaaccagaattacatgctacacgaccaaactaaggatgttctgttaaacccaagagctcaaagctcgtcgactgaaatc |
311 |
Q |
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| T |
17522462 |
cctcaatcagaattgcatgctaccagaacaaacgaaggatgttctcttaaacccaagagctcaaagctcgtcaactgaaatc |
17522543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 17020138 - 17020302
Alignment:
| Q |
64 |
ttcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgt |
163 |
Q |
| |
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||||||| ||||| | |||| |||||||||| ||||||||||| |||||| ||||| | || || |||||||| |||| | |||||| | |||||||| |
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| T |
17020138 |
ttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgt |
17020237 |
T |
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| Q |
164 |
tgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaa |
228 |
Q |
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||| || || ||| | |||| |||||||||||||| | || ||||| ||| | |||||||||| |
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| T |
17020238 |
tgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa |
17020302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 17550575 - 17550739
Alignment:
| Q |
64 |
ttcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgt |
163 |
Q |
| |
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||||||| ||||| | |||| |||||||||| ||||||||||| |||||| ||||| | || || |||||||| |||| | |||||| | |||||||| |
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| T |
17550575 |
ttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgt |
17550674 |
T |
|
| Q |
164 |
tgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaa |
228 |
Q |
| |
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||| || || ||| | |||| |||||||||||||| | || ||||| ||| | |||||||||| |
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| T |
17550675 |
tgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa |
17550739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 17017087 - 17016902
Alignment:
| Q |
64 |
ttcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgt |
163 |
Q |
| |
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||||||| |||||||||| | | | |||||| ||||||||||| || ||| | || || ||||| ||||||||| |||| |||||||| || |||| || |
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| T |
17017087 |
ttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttcttttcaacatgctatgcttgcctataggtaacgt |
17016988 |
T |
|
| Q |
164 |
tgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
249 |
Q |
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|| ||||| || | | ||| |||||||| |||||||| || || || ||||||| |||||||||||||| |||||||||| |
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| T |
17016987 |
agtaaagcttctcaacaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
17016902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 249
Target Start/End: Complemental strand, 17547524 - 17547339
Alignment:
| Q |
64 |
ttcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgt |
163 |
Q |
| |
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||||||| |||||||||| | | | |||||| ||||||||||| || ||| | || || ||||| ||||||||| |||| |||||||| || |||| || |
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| T |
17547524 |
ttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttcttttcaacatgctatgcttgcctataggtaacgt |
17547425 |
T |
|
| Q |
164 |
tgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
249 |
Q |
| |
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|| ||||| || | | ||| |||||||| |||||||| || || || ||||||| |||||||||||||| |||||||||| |
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| T |
17547424 |
agtaaagcttctcaacaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
17547339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 17986 - 18171
Alignment:
| Q |
64 |
ttcttatcgacacaaagaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgt |
163 |
Q |
| |
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||||||| |||||||||||| | | |||||| ||||||||||| || ||| | || | ||||| ||||||||| |||| |||||||| || || | || |
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| T |
17986 |
ttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttcttttcaacatgctatgcttgcctataggcaacgt |
18085 |
T |
|
| Q |
164 |
tgtgaagctgctaagcgcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaaacctcaaccagaattacatgc |
249 |
Q |
| |
|
|| ||||| || ||| ||| |||||||| |||||||| || || || ||||||| |||||||||||||| |||||||||| |
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| T |
18086 |
agtaaagcttctcagcaagaacgaaatggttgggagcttaggcaacctctaccagagtgtagaaaacctcaaccacaattacatgc |
18171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 9116 - 8968
Alignment:
| Q |
80 |
gaatcagaaagttctatttgctgaagcttcaaaatctgtggttgacttccttttcaacttgctgtgcttgccaatcggtactgttgtgaagctgctaagc |
179 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||| ||||| | || || |||||||| |||| | |||||| | ||||||||||| || || ||| | |
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| T |
9116 |
gaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaac |
9017 |
T |
|
| Q |
180 |
gcgaattgcatggttggtagcttaggaaatctatatgagagtgttgaaa |
228 |
Q |
| |
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|||| |||||||||||||| | || ||||| ||| | |||||||||| |
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| T |
9016 |
aagaatggcatggttggtagcattggtaatctctataacagtgttgaaa |
8968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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