View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21240_low_10 (Length: 311)

Name: NF21240_low_10
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21240_low_10
NF21240_low_10
[»] chr4 (1 HSPs)
chr4 (1-154)||(55743359-55743513)
[»] scaffold0096 (1 HSPs)
scaffold0096 (221-276)||(40719-40775)
[»] chr7 (1 HSPs)
chr7 (223-275)||(9158851-9158903)
[»] chr1 (3 HSPs)
chr1 (219-276)||(32151777-32151835)
chr1 (238-275)||(508775-508812)
chr1 (222-251)||(27787750-27787779)
[»] chr3 (1 HSPs)
chr3 (224-276)||(42371078-42371130)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 55743513 - 55743359
Alignment:
Q  1 ttaagttatttgaaacgattatgaaactaatcttaatctgattcttt---agatagcagtttaaaacccttcgtctctccccaataatatattatcctga 97  Q
    |||||||||||| | | |||||||||||||||||| ||||||||||    |  ||||| ||||||||| || |||||||||||||| |||||||||| |     
T  55743513 ttaagttatttggaccaattatgaaactaatcttactctgattcttcttcatgtagcaatttaaaaccatttgtctctccccaata-tatattatccggg 55743415  T
Q  98 gatttgtggagtttgattctcaatgtaaagttttatttttggaaaacaattaagtta 154  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||    
T  55743414 gatttgttgagtctgattctcaatgtaaagtttta-ttttggaaaacaattaagtta 55743359  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 40719 - 40775
Alignment:
Q  221 ggggctgctaatttacacc-acctaaaaacactaaagtacgagttagcaatctacac 276  Q
    ||||||||||| ||||||| ||||||||||||||| |||| ||||||||| ||||||    
T  40719 ggggctgctaacttacacctacctaaaaacactaaggtacaagttagcaagctacac 40775  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 9158903 - 9158851
Alignment:
Q  223 ggctgctaatttacaccacctaaaaacactaaagtacgagttagcaatctaca 275  Q
    |||||||||||||||||||||||||||||||| |    |||||||||||||||    
T  9158903 ggctgctaatttacaccacctaaaaacactaaggggtaagttagcaatctaca 9158851  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 32151835 - 32151777
Alignment:
Q  219 ttggggctgctaatttacacc-acctaaaaacactaaagtacgagttagcaatctacac 276  Q
    ||||||||||||| ||||||| ||||||||||||||| || | ||||||||| ||||||    
T  32151835 ttggggctgctaacttacacccacctaaaaacactaaggtgcaagttagcaagctacac 32151777  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 508812 - 508775
Alignment:
Q  238 ccacctaaaaacactaaagtacgagttagcaatctaca 275  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  508812 ccacctaaaaacactaaagtacaagttagcaaactaca 508775  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 27787779 - 27787750
Alignment:
Q  222 gggctgctaatttacaccacctaaaaacac 251  Q
    ||||||||||||||||||||||||||||||    
T  27787779 gggctgctaatttacaccacctaaaaacac 27787750  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 42371130 - 42371078
Alignment:
Q  224 gctgctaatttacaccacctaaaaacactaaagtacgagttagcaatctacac 276  Q
    |||||||| |||||||||||||||| ||||| || | ||||||||| ||||||    
T  42371130 gctgctaacttacaccacctaaaaatactaaggtgcaagttagcaagctacac 42371078  T

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