View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_low_13 (Length: 257)
Name: NF21240_low_13
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 31766414 - 31766655
Alignment:
| Q |
4 |
gctcaaagattcagagattatgtttcttaaagagaaattagtggaagctaatagtcataacaagttaattgagaagagattgaatcaaagtggaacatta |
103 |
Q |
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| T |
31766414 |
gctcaaagattcagagattatgtttcttaaagagaaattagtggaagctaatggtcataacaagttaattgagaagagattgaatcaaagtggaacatta |
31766513 |
T |
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| Q |
104 |
tcagtacttgataatgttgttcacttatcagggttaagtcctagccattttgctactgttcttcgtcacgcagttagatcgattcgaaattttgtgaggt |
203 |
Q |
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| T |
31766514 |
tcagtacttgataatgttgttcacttatcagggttaagtcctagccattttgctactgttcttcgtcacgcagttagatcgattcgaaactttgtgaggt |
31766613 |
T |
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| Q |
204 |
taattgttgatgaaatgagatctgcaaaatgggatattgatg |
245 |
Q |
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| T |
31766614 |
taattgttgatgaaatgagatctgcaaaatgggatattgatg |
31766655 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 20898438 - 20898533
Alignment:
| Q |
11 |
gattcagagattatgtttcttaaagagaaattagtggaagctaatagtcataacaagttaattgagaagagattgaatcaaagtggaacattatca |
106 |
Q |
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| T |
20898438 |
gattctgagataatgtttcttaaagagaagttagaggaggcaaataaacagaacaagttaattgaaaggaggttaaatcaaagtggttcattatca |
20898533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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