View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_low_14 (Length: 252)
Name: NF21240_low_14
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9003251 - 9003132
Alignment:
| Q |
1 |
agtaccaatcattctgcggagtcgttcctattttgcatttctctacaataaataagatnnnnnnnnncctcatattaacaacacgatacaatattccaat |
100 |
Q |
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| T |
9003251 |
agtaccaatcattctgcggagtcgttcctattttgcatttctctaaaataaataagat-aaaaaaaacctcatattaaaaacacgatacaatattccaat |
9003153 |
T |
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| Q |
101 |
atatatttattgtcttccact |
121 |
Q |
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||||||||||||||||||||| |
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| T |
9003152 |
atatatttattgtcttccact |
9003132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 9003054 - 9003015
Alignment:
| Q |
199 |
gtatatagttagctagttatttatattaccttgaatgtcc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
9003054 |
gtatatagttagctagttatttatattaccttgaatgtcc |
9003015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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