View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_low_16 (Length: 241)
Name: NF21240_low_16
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9003330 - 9003553
Alignment:
| Q |
1 |
ccggtcgtgacaaagttatatatagtaatggaaaaaggattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctga |
100 |
Q |
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| T |
9003330 |
ccggtcgtgacaaagttatatatagtaatggaaaaaggattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctga |
9003429 |
T |
|
| Q |
101 |
ttggatcatgcatgagtatagactcgacgataacaccaccaatgacaccaatctggtacgtatttgatacaaatatacgtctggataaacaacttaatca |
200 |
Q |
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| T |
9003430 |
ttggatcatgcatgagtatagactcgacgataacaccaccaatgacaccaatctggtaagtatttgatacaaatatacgtctggataaacaacttaatca |
9003529 |
T |
|
| Q |
201 |
agcactttgttgaatgatacttat |
224 |
Q |
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||||||| | |||||||||||||| |
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| T |
9003530 |
agcacttcgctgaatgatacttat |
9003553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 32225605 - 32225522
Alignment:
| Q |
38 |
gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatag |
121 |
Q |
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| T |
32225605 |
gattggaatgaggaagacactcgttttctacaaaggaagagcacctaatggacagaaaactgattggatcatgcatgaatatag |
32225522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 3575526 - 3575607
Alignment:
| Q |
38 |
gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat |
119 |
Q |
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| T |
3575526 |
gattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatgagtat |
3575607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 8450197 - 8450279
Alignment:
| Q |
39 |
attggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtatag |
121 |
Q |
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| T |
8450197 |
attgggatgaggaagacccttgttttctacaaaggaagagcccctaatggacagaaatctgattggatcatgcatgaatatag |
8450279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 12276670 - 12276746
Alignment:
| Q |
39 |
attggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatga |
115 |
Q |
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| T |
12276670 |
attggaatgagaaagactcttgtgttctacaaaggtagagctcctcatggacaaaagactgattggattatgcatga |
12276746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 42048587 - 42048509
Alignment:
| Q |
40 |
ttggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagta |
118 |
Q |
| |
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|||| |||||||||||||| || || |||||||| ||||| || |||| || |||||||||||||||||||||||||| |
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| T |
42048587 |
ttgggatgagaaagactctagtgttttacaaaggacgtgccccaaatggacagaaatctgattggatcatgcatgagta |
42048509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 26496886 - 26496972
Alignment:
| Q |
33 |
aaaaggattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat |
119 |
Q |
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| T |
26496886 |
aaaaggattggaatgaggaaaaccttagtgttctacactggacgtgctcctcatggtcacaaaactgattggatcatgcatgagtat |
26496972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 17775569 - 17775541
Alignment:
| Q |
179 |
gtctggataaacaacttaatcaagcactt |
207 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17775569 |
gtctggataaacaacttaatcaagcactt |
17775541 |
T |
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