View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21240_low_17 (Length: 213)
Name: NF21240_low_17
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 4637496 - 4637321
Alignment:
| Q |
23 |
cttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatccaaaccaaaccaaatgagaagt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||| |
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| T |
4637496 |
cttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagt |
4637397 |
T |
|
| Q |
123 |
taaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4637396 |
taaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgt |
4637321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4696624 - 4696821
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatc |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4696624 |
ctctgttaaagtaaacaacaacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcatt |
4696723 |
T |
|
| Q |
101 |
caaaccaaaccaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | || ||||||||| |||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
4696724 |
caaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgt |
4696821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 4654149 - 4653960
Alignment:
| Q |
9 |
aagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatccaaaccaa |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||| | || ||||| |||| ||||||||||||||||||||||||| | | |
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|
| T |
4654149 |
aagtaaacaacaaacttacacttcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcaccaaagaatattgcatccaagtcca |
4654050 |
T |
|
| Q |
109 |
accaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
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||| ||| ||||| |||||||| |||||||||| |||| || |||||| |||||||||||||||||||| ||||| || || |||||||| |
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| T |
4654049 |
accgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgt |
4653960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4845446 - 4845643
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatc |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| || || | |||||||| ||||||||||||||||| |
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|
| T |
4845446 |
ctctgtcgaagtaaacaacaatcttacccttcttaaaaacttcagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcatt |
4845545 |
T |
|
| Q |
101 |
caaaccaaaccaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|| | ||||||||||| |||| |||||||| ||||| |||| |||| ||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| |
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|
| T |
4845546 |
cagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgt |
4845643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4711518 - 4711703
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| | |||||||||||||||||||||||||| |
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| T |
4711518 |
ctctgtcaaagtaaacaacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcatt |
4711605 |
T |
|
| Q |
101 |
caaaccaaaccaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| |||||||||| |||| |||||| || |||||||||||||||||||| |||||||| |||||| |||| |
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|
| T |
4711606 |
caaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgt |
4711703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 4864578 - 4864401
Alignment:
| Q |
9 |
aagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatccaaaccaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||| |||| ||| |
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|
| T |
4864578 |
aagtaaacaacaaaattacccttcttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaa |
4864479 |
T |
|
| Q |
109 |
accaaatgagaagttaaacatatctttcattc---ctaacagcataaaccaatcaaatccttattatgcttttattaa |
183 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||| | || | ||||| |||||||||||||||||||| || ||||| |
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|
| T |
4864478 |
atcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa |
4864401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 4783277 - 4783466
Alignment:
| Q |
9 |
aagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatccaaaccaa |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| | | ||| ||||||||||| |||||||| ||| |
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|
| T |
4783277 |
aagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaa |
4783376 |
T |
|
| Q |
109 |
accaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| |||| || |||||||| | |||| ||||||||| |||||||| ||||||||||| |
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|
| T |
4783377 |
accaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgt |
4783466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 4815706 - 4815895
Alignment:
| Q |
9 |
aagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatccaaaccaa |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| | | ||| ||||||||||| |||||||| ||| |
|
|
| T |
4815706 |
aagtaaacaacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaa |
4815805 |
T |
|
| Q |
109 |
accaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|||||| |||||| |||||||| |||||||||| |||| || |||||||| | |||| ||||||||| |||||||| ||||||||||| |
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|
| T |
4815806 |
accaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgt |
4815895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4644356 - 4644216
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatc |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| || |||||| | || |||| |||||| ||||||||| |
|
|
| T |
4644356 |
ctctgtcaaagtaaacaacaatctcacccttcttcaaaacttcaacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatc |
4644257 |
T |
|
| Q |
101 |
caaaccaaaccaaatgagaagttaaacatatctttcattcc |
141 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
4644256 |
caaattaaaacaaatgagaagctaaacataactttcattcc |
4644216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 4673364 - 4673167
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaacttcaacccttcactttggctctattttgatgacgaaaaaatcaccaaagaatattgcatc |
100 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||| | || | |||| |||| |||||||||||||| ||| ||| |
|
|
| T |
4673364 |
ctctatcaaagttaacaacaatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaacaatcaccaaagaattttgtatc |
4673265 |
T |
|
| Q |
101 |
caaaccaaaccaaatgagaagttaaacatatctttcattcctaacagcataaaccaatcaaatccttattatgcttttattaacgggatcgaagttgt |
198 |
Q |
| |
|
|||| ||| || ||||||||| |||||||| ||||||||| | || ||| ||| |||||||| | | |||||||| |||||||| |||||| |||| |
|
|
| T |
4673264 |
caaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgt |
4673167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
| Q |
79 |
aatcaccaaagaatattgcatccaaaccaaaccaaatgagaagttaaacatatctttcattcc |
141 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
4631513 |
aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc |
4631451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4663351 - 4663310
Alignment:
| Q |
1 |
ctctgtcaaagtaaacaacaaacttacccttcttaaaaactt |
42 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
4663351 |
ctctgtcaaactaaacgacaatcttacccttcttaaaaactt |
4663310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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