View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21240_low_19 (Length: 203)
Name: NF21240_low_19
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 55119173 - 55119125
Alignment:
| Q |
18 |
aaaggtctaataaaccagaagagacacacaagtcaacccaaataatccg |
66 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55119173 |
aaaggtctaacaaaccagaagagacacacaagtcaacccaaataatccg |
55119125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 55119046 - 55119010
Alignment:
| Q |
144 |
gaataagaaacaagaacaatgtgtctctcctacgagc |
180 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55119046 |
gaataagaaacacaaacaatgtgtctctcctacgagc |
55119010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University