View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21240_low_2 (Length: 527)

Name: NF21240_low_2
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21240_low_2
NF21240_low_2
[»] chr6 (4 HSPs)
chr6 (296-487)||(35042915-35043105)
chr6 (160-247)||(35043112-35043199)
chr6 (92-158)||(35043225-35043291)
chr6 (123-158)||(35042800-35042835)
[»] chr4 (4 HSPs)
chr4 (252-494)||(50847510-50847762)
chr4 (56-96)||(29101906-29101946)
chr4 (98-154)||(50847309-50847365)
chr4 (56-96)||(52413657-52413697)
[»] chr2 (2 HSPs)
chr2 (56-94)||(36237617-36237655)
chr2 (56-92)||(8541737-8541773)
[»] chr5 (2 HSPs)
chr5 (56-93)||(23995293-23995330)
chr5 (54-94)||(234684-234724)
[»] scaffold1862 (1 HSPs)
scaffold1862 (56-96)||(67-107)
[»] chr1 (2 HSPs)
chr1 (56-96)||(23621648-23621688)
chr1 (56-96)||(23738401-23738441)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 296 - 487
Target Start/End: Complemental strand, 35043105 - 35042915
Alignment:
Q  296 tatgtgcaatgagttgaaatcaagatccctatacacaattgggattatttagtgacaaagcccctgcgaattagttatggtaaatgatctcagtggcttg 395  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  35043105 tatgttcaatgagttgaaatcaagatccctatatacaattgggattatttagtgacaaagccc-tgcgaattagttatggtaaatgttctcagtggcttg 35043007  T
Q  396 cgagattaagatccccaaccaattaggatatatataagaatttactgactctcacaaaactgcagcatgattattcaattaattattgaaaa 487  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35043006 cgagattaagatccccaaccaattaggatatatataagaattgactgactctcacaaaactgcagcatgattattcaattaattattgaaaa 35042915  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 35043199 - 35043112
Alignment:
Q  160 aaaatcatttatcgtttcttgctatcctttaattttgattctttagaaacattattaggtgtaacttatgcattcataatgcttataa 247  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35043199 aaaatcatttatcgtttcttgctatcctttaattttcattatttagaaacattattaggtgtaacttatgcattcataatgcttataa 35043112  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 35043291 - 35043225
Alignment:
Q  92 tgtaattctttgatccaatggctcctattatcccaacaaaataaaattattaaaggatcacacctga 158  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||    
T  35043291 tgtaattctttgatccaattactcctattatcccaacaaaataaaattattgaaggatcacacctga 35043225  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 35042800 - 35042835
Alignment:
Q  123 cccaacaaaataaaattattaaaggatcacacctga 158  Q
    |||||||||||||||||||| |||||||||||||||    
T  35042800 cccaacaaaataaaattattgaaggatcacacctga 35042835  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 252 - 494
Target Start/End: Complemental strand, 50847762 - 50847510
Alignment:
Q  252 tcttgttattttcacgtgaaaagaattggttgaagaaagctatatatgtgcaatgagttgaaatcaagatccctatac--acaattgggattatttagtg 349  Q
    |||||||||||||||||||||| || |||| ||||||| |||| |    | ||| |||||||||||||||||||| ||  ||||||||||||||||||||    
T  50847762 tcttgttattttcacgtgaaaaaaaatggtcgaagaaacctattt----gaaattagttgaaatcaagatcccta-actgacaattgggattatttagtg 50847668  T
Q  350 acaaagcccctgcgaattagttatggtaaatgatctcagtggcttgcga----gattaagatccccaaccaattaggatatat-ataag-----aattta 439  Q
     ||||| ||||  |||| |||||||||||| | ||||| || || || |    |||||||||||||||| ||||| ||| ||| | |||     |  |||    
T  50847667 gcaaagtccctctgaatgagttatggtaaaggttctcaatgtctagccattaagattaagatccccaacaaattacgatgtattacaagtcacaacatta 50847568  T
Q  440 c---tgactctcacaaaactgcagcatgattattcaattaattattgaaaaattggag 494  Q
    |   |||||||||||||| ||||||||||||||| |||||| | ||||||||||||||    
T  50847567 caattgactctcacaaaattgcagcatgattatttaattaactcttgaaaaattggag 50847510  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 29101946 - 29101906
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgtaa 96  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  29101946 tatatatatatataggcaggatccgttgacatcaggtgtaa 29101906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 50847309 - 50847365
Alignment:
Q  98 tctttgatccaatggctcctattatcccaacaaaataaaattattaaaggatcacac 154  Q
    ||||| |||||| ||||| ||||||||||||||||| ||| |||| |||||||||||    
T  50847309 tctttaatccaaaggctcgtattatcccaacaaaatgaaaatattgaaggatcacac 50847365  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 52413697 - 52413657
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgtaa 96  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  52413697 tatatatatatagagacaggatccgttgacaccaggtgtaa 52413657  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 36237617 - 36237655
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgt 94  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  36237617 tatatatatagagagtcaggatccgttgacaccaggtgt 36237655  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 8541737 - 8541773
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggt 92  Q
    |||||||||| |||| |||||||||||||||||||||    
T  8541737 tatatatatatagagtcaggatccgttgacatcaggt 8541773  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 23995293 - 23995330
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtg 93  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  23995293 tatatatatatagagtcaggatccgttgacatcaggtg 23995330  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 234684 - 234724
Alignment:
Q  54 tttatatatatagagaggcaggatccgttgacatcaggtgt 94  Q
    |||||||||||| |||| ||||||||||||||| |||||||    
T  234684 tttatatatatatagagtcaggatccgttgacaccaggtgt 234724  T

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Target: scaffold1862 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 107 - 67
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgtaa 96  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  107 tatatatatatagagacaggatccgttgacaccaggtgtaa 67  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 23621648 - 23621688
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgtaa 96  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  23621648 tatatatatatagaggtaggatccgttgacaccaggtgtaa 23621688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 23738401 - 23738441
Alignment:
Q  56 tatatatatagagaggcaggatccgttgacatcaggtgtaa 96  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  23738401 tatatatatagagaggtaggatctgttgacaccaggtgtaa 23738441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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