View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21240_low_5 (Length: 409)
Name: NF21240_low_5
Description: NF21240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21240_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 2096744 - 2097123
Alignment:
| Q |
15 |
aaaaagtaaaaattatagtatgttcggtattaaagtggatatggcataatcacgataatccatagtgattttgcaaaagctacaatatttagttttagaa |
114 |
Q |
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| T |
2096744 |
aaaaagtaaaaattatagtatgttcggtattaaagtggatatggcataatcacgataatccatagtgattttgcaaaagctacaatatttagttttagaa |
2096843 |
T |
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| Q |
115 |
gattccgacataactatcgtgataccaaacatcagcttatacaattttctatgtaaaaactactattttttactatttaagcaatgtcctaattatattg |
214 |
Q |
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| T |
2096844 |
gattctgacataattatcgtgataccaaacatcagcttatacaattttctatgtaaaaactaatattttttactatttaagcaatgtcctaattatattg |
2096943 |
T |
|
| Q |
215 |
ttagcattttattattaaagaaatccattgaaaatttgcatcagccacatttaaggacacactcacacaccaagtttcagaaacaataattgtacagtga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2096944 |
ttagcattttattattaaagaaatccattgaaaatttgcatcagccacatttaaggacacactcacacaccaagtttcagaaacaataattgtacagtga |
2097043 |
T |
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| Q |
315 |
cattaagattcgcagaatagccattatgactaccatatttgaggttcaggactaggtaggtaagcttttatctcagatat |
394 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097044 |
cattaagattcacagaatagccattatgactaccatatttgaggttcaggactaggtaggtaagcttttatctcagatat |
2097123 |
T |
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