View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_high_2 (Length: 772)
Name: NF21241_high_2
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 709; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 12 - 764
Target Start/End: Original strand, 40115596 - 40116348
Alignment:
| Q |
12 |
accatcacctatggtaattttgtctgagccatgatagggagcagtaaggtgaagatcatcaagagtattagtgatgtggtttgtagcgccggaatcaagg |
111 |
Q |
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| T |
40115596 |
accatcacctatggtaattttgtctgagccatgatagggagcagtaaggtgcagatcatcaagagtattagtgatgtggtttgtagcgccggaatcaagg |
40115695 |
T |
|
| Q |
112 |
atccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttt |
211 |
Q |
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| T |
40115696 |
atccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttt |
40115795 |
T |
|
| Q |
212 |
tggcagtgtgtccagatttgtcccagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaattgccatgattagg |
311 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40115796 |
tggaagtgtgtccagatttgtcacagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaatttccatgattagg |
40115895 |
T |
|
| Q |
312 |
tgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcatcacgttgcagaacattttcatag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40115896 |
tgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcttcacgttgcagaacattttcatag |
40115995 |
T |
|
| Q |
412 |
tccacaagtagatcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagag |
511 |
Q |
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| T |
40115996 |
tccataagtagatcatgaagctcaacaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattgagag |
40116095 |
T |
|
| Q |
512 |
catgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttgga |
611 |
Q |
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| T |
40116096 |
catgaataaccaagtcatcatcatcaacaggtttgttgatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttgga |
40116195 |
T |
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| Q |
612 |
gccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagat |
711 |
Q |
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| T |
40116196 |
gccctttgttgtacgagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagat |
40116295 |
T |
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| Q |
712 |
gttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgat |
764 |
Q |
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| T |
40116296 |
gttttcacattgccaagagcagttatgatgctctgatcgacagatgtgatgat |
40116348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 698
Target Start/End: Complemental strand, 3016628 - 3016353
Alignment:
| Q |
423 |
atcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataacc |
522 |
Q |
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||||||||| ||| |||| || |||| |||||| || || | |||||| |||| | |||||| |||| || ||||| ||||| |||||||||| || |
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| T |
3016628 |
atcatgaagttcatcaaatgcgatggcattctcccgagttctaagggctgcagcgatctctttgaactcggacccaaggccattgggagcatgaatcacg |
3016529 |
T |
|
| Q |
523 |
aagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttg |
622 |
Q |
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| T |
3016528 |
agatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgatggcttggaggtattcagagacggatttggaacctttagagg |
3016429 |
T |
|
| Q |
623 |
tacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatccca |
698 |
Q |
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| T |
3016428 |
ttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacattttgttaaggatatccca |
3016353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 673 - 761
Target Start/End: Original strand, 9039282 - 9039370
Alignment:
| Q |
673 |
gcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgat |
761 |
Q |
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|||||||| |||||||| ||||||||||||||||| || | ||| |||||||| | | || |||||||| | ||||||||||||||| |
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| T |
9039282 |
gcaaacatcttcttgagagtatcccaagcttgttgggaggatttgacattgcctaatgtcgtgatgatgctatgatcgacagatgtgat |
9039370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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