View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_high_4 (Length: 359)
Name: NF21241_high_4
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 84 - 350
Target Start/End: Original strand, 45024330 - 45024596
Alignment:
| Q |
84 |
atgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtaggaacttgagtgattacagaaaatatcaaagatgagaagt |
183 |
Q |
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| T |
45024330 |
atgacttataccgttaaatatcgggtttccggtgacatttaacaaaatctgtataaggtaggaacttgagtgattacagaaaatatcaatgatgagaagt |
45024429 |
T |
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| Q |
184 |
gagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgtcctctgttggaatcttacaatacattctacaaacaattt |
283 |
Q |
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| T |
45024430 |
gagagacaagagttagtgatagcagaattgaagagacaactatggttagcagttcctctgtcctctgttggaatcttacaatacattctacaaacaattt |
45024529 |
T |
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| Q |
284 |
ctattatgtttgttggacatcttggtactctcccactttctggtgcttccatggccacttcctttgc |
350 |
Q |
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| T |
45024530 |
ctattatgtttgttggacatcttggtactctcccactttctggtgcttccatggccacttcctttgc |
45024596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 45024274 - 45024313
Alignment:
| Q |
22 |
acgaatgcagtattcattgtggtcactgctttctttgtac |
61 |
Q |
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| T |
45024274 |
acgaatgcattattcattgtggtcactgctttctttgtac |
45024313 |
T |
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