View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_low_10 (Length: 243)
Name: NF21241_low_10
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 35093786 - 35094011
Alignment:
| Q |
18 |
ggttagtataggctctaatgactcgttcaatagaacatttgaggatttaagatgaccatgaggcgcaatcaagttcggcaactccttgtatagatattca |
117 |
Q |
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| T |
35093786 |
ggttagtataggctctaatgactcgttcaatagaacatttgaggatttaagatgaccatgaggcgcaatcaagttcggcaactccttgtatagatattca |
35093885 |
T |
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| Q |
118 |
atccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcctgtattagatgtaaaagttagtt |
217 |
Q |
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| T |
35093886 |
atccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcctgtattagatgtaaaagttagtt |
35093985 |
T |
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| Q |
218 |
acactagttagttgctctcattgcct |
243 |
Q |
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| T |
35093986 |
acactagttagttgctctcattgcct |
35094011 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 34239714 - 34239746
Alignment:
| Q |
199 |
ttagatgtaaaagttagttacactagttagttg |
231 |
Q |
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| T |
34239714 |
ttagatgtaaaagttagttacacaagttagttg |
34239746 |
T |
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